Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC15.03■□□□□ -0
SSU72Q9NP77 FLJ16779-201ENST00000612722 7638 ntBASIC15.03■□□□□ -0
SSU72Q9NP77 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
SSU72Q9NP77 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.03■□□□□ -0
SSU72Q9NP77 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SSU72Q9NP77 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
SSU72Q9NP77 API5-203ENST00000455725 2257 ntTSL 2 BASIC15.03■□□□□ -0
SSU72Q9NP77 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
SSU72Q9NP77 AC093525.8-201ENST00000624099 1342 ntBASIC15.03■□□□□ -0
SSU72Q9NP77 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15.03■□□□□ -0
SSU72Q9NP77 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
SSU72Q9NP77 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
SSU72Q9NP77 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SSU72Q9NP77 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.03■□□□□ -0
SSU72Q9NP77 AL645937.2-201ENST00000396808 931 ntBASIC15.03■□□□□ -0
SSU72Q9NP77 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.03■□□□□ -0
SSU72Q9NP77 AC004945.1-201ENST00000416738 983 ntBASIC15.03■□□□□ -0
SSU72Q9NP77 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SSU72Q9NP77 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SSU72Q9NP77 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.03■□□□□ -0
SSU72Q9NP77 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.03■□□□□ -0
SSU72Q9NP77 PP7080-204ENST00000510714 601 ntTSL 3 BASIC15.03■□□□□ -0
SSU72Q9NP77 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
SSU72Q9NP77 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.03■□□□□ -0
SSU72Q9NP77 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.03■□□□□ -0
SSU72Q9NP77 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.03■□□□□ -0
SSU72Q9NP77 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC15.03■□□□□ -0
SSU72Q9NP77 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.03■□□□□ -0
SSU72Q9NP77 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
SSU72Q9NP77 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.03■□□□□ -0
SSU72Q9NP77 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC15.03■□□□□ -0
SSU72Q9NP77 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.03■□□□□ -0
SSU72Q9NP77 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.03■□□□□ -0
SSU72Q9NP77 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.03■□□□□ -0
SSU72Q9NP77 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
SSU72Q9NP77 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.03■□□□□ -0
SSU72Q9NP77 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC15.03■□□□□ -0
SSU72Q9NP77 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC15.03■□□□□ -0
SSU72Q9NP77 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC15.03■□□□□ -0
SSU72Q9NP77 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SSU72Q9NP77 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
SSU72Q9NP77 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC15.03■□□□□ -0
SSU72Q9NP77 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.03■□□□□ -0
SSU72Q9NP77 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
SSU72Q9NP77 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC15.03■□□□□ -0
SSU72Q9NP77 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC15.03■□□□□ -0
SSU72Q9NP77 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SSU72Q9NP77 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC15.02■□□□□ -0
SSU72Q9NP77 AC011840.2-201ENST00000563063 1520 ntBASIC15.02■□□□□ -0
SSU72Q9NP77 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SSU72Q9NP77 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC15.02■□□□□ -0
SSU72Q9NP77 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC15.02■□□□□ -0
SSU72Q9NP77 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SSU72Q9NP77 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.02■□□□□ -0
SSU72Q9NP77 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
SSU72Q9NP77 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
SSU72Q9NP77 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
SSU72Q9NP77 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.02■□□□□ -0
SSU72Q9NP77 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SSU72Q9NP77 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SSU72Q9NP77 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
SSU72Q9NP77 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.02■□□□□ -0
SSU72Q9NP77 AL627223.1-201ENST00000416693 442 ntBASIC15.02■□□□□ -0
SSU72Q9NP77 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.02■□□□□ -0
SSU72Q9NP77 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.02■□□□□ -0
SSU72Q9NP77 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.02■□□□□ -0
SSU72Q9NP77 HTR5BP-201ENST00000430851 1154 ntBASIC15.02■□□□□ -0
SSU72Q9NP77 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.02■□□□□ -0
SSU72Q9NP77 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.02■□□□□ -0
SSU72Q9NP77 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.02■□□□□ -0
SSU72Q9NP77 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
SSU72Q9NP77 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
SSU72Q9NP77 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.02■□□□□ -0
SSU72Q9NP77 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
SSU72Q9NP77 MIR6074-201ENST00000612054 107 ntBASIC15.02■□□□□ -0
SSU72Q9NP77 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
SSU72Q9NP77 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.02■□□□□ -0
SSU72Q9NP77 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
SSU72Q9NP77 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC15.02□□□□□ -0.01
SSU72Q9NP77 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SSU72Q9NP77 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SSU72Q9NP77 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SSU72Q9NP77 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SSU72Q9NP77 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
SSU72Q9NP77 MIR600HG-201ENST00000449175 5984 ntBASIC15.02□□□□□ -0.01
SSU72Q9NP77 MAPT-IT1-201ENST00000624111 3016 ntBASIC15.02□□□□□ -0.01
SSU72Q9NP77 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SSU72Q9NP77 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.02□□□□□ -0.01
SSU72Q9NP77 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SSU72Q9NP77 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC15.02□□□□□ -0.01
SSU72Q9NP77 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.02□□□□□ -0.01
SSU72Q9NP77 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SSU72Q9NP77 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SSU72Q9NP77 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SSU72Q9NP77 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.02□□□□□ -0.01
SSU72Q9NP77 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SSU72Q9NP77 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SSU72Q9NP77 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
SSU72Q9NP77 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SSU72Q9NP77 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms