Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
NKX3-1Q99801 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
NKX3-1Q99801 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.32□□□□□ -0.28
NKX3-1Q99801 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC13.32□□□□□ -0.28
NKX3-1Q99801 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC13.32□□□□□ -0.28
NKX3-1Q99801 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 PNMT-202ENST00000394246 821 ntTSL 2 BASIC13.32□□□□□ -0.28
NKX3-1Q99801 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC13.32□□□□□ -0.28
NKX3-1Q99801 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC13.32□□□□□ -0.28
NKX3-1Q99801 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC13.32□□□□□ -0.28
NKX3-1Q99801 AC023141.5-201ENST00000458585 616 ntBASIC13.32□□□□□ -0.28
NKX3-1Q99801 PTK7-212ENST00000476760 902 ntTSL 2 BASIC13.32□□□□□ -0.28
NKX3-1Q99801 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC13.32□□□□□ -0.28
NKX3-1Q99801 LITAF-210ENST00000571976 548 ntTSL 2 BASIC13.32□□□□□ -0.28
NKX3-1Q99801 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC13.32□□□□□ -0.28
NKX3-1Q99801 LITAF-214ENST00000574703 486 ntTSL 2 BASIC13.32□□□□□ -0.28
NKX3-1Q99801 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC13.32□□□□□ -0.28
NKX3-1Q99801 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 MIR6080-201ENST00000617359 66 ntBASIC13.32□□□□□ -0.28
NKX3-1Q99801 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
NKX3-1Q99801 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.32□□□□□ -0.28
NKX3-1Q99801 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC13.32□□□□□ -0.28
NKX3-1Q99801 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX3-1Q99801 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
NKX3-1Q99801 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 RPL5P21-201ENST00000404620 815 ntBASIC13.31□□□□□ -0.28
NKX3-1Q99801 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 FAM8A3P-201ENST00000427218 844 ntBASIC13.31□□□□□ -0.28
NKX3-1Q99801 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 METTL23-205ENST00000588302 925 ntTSL 5 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 AL355385.1-201ENST00000606123 409 ntBASIC13.31□□□□□ -0.28
NKX3-1Q99801 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms