Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 REXO1L4P-201ENST00000605109 1937 ntBASIC14.33□□□□□ -0.11
PTCHD1Q96NR3 TCAF2P1-201ENST00000291129 2421 ntBASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 ACA64.2-201ENST00000459014 129 ntBASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 AL512343.1-201ENST00000605837 169 ntBASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 AC145423.3-201ENST00000615987 467 ntBASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 AC006058.4-201ENST00000624016 1670 ntBASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTCHD1Q96NR3 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 KRT8P14-201ENST00000414254 1442 ntBASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 AC092933.1-201ENST00000393644 945 ntBASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 AC079776.1-201ENST00000401540 1152 ntBASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 ACTBP8-201ENST00000403258 1108 ntBASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 C2orf27AP3-201ENST00000434123 579 ntBASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 AC016694.1-201ENST00000434179 700 ntBASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 PUDP-206ENST00000540122 825 ntTSL 2 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 AL354718.3-201ENST00000616414 581 ntBASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 CR382287.1-201ENST00000623954 586 ntBASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 AL360270.3-201ENST00000609118 1348 ntBASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.32□□□□□ -0.12
PTCHD1Q96NR3 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms