Protein–RNA interactions for Protein: Q96AA3

RFT1, Protein RFT1 homolog, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFT1Q96AA3 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
RFT1Q96AA3 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RFT1Q96AA3 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RFT1Q96AA3 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RFT1Q96AA3 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
RFT1Q96AA3 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
RFT1Q96AA3 MIR574-201ENST00000385209 96 ntBASIC13.53□□□□□ -0.24
RFT1Q96AA3 IMP4-203ENST00000409935 958 ntTSL 5 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 AC004832.2-201ENST00000426397 482 ntBASIC13.53□□□□□ -0.24
RFT1Q96AA3 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 TCAF1P1-201ENST00000414990 2232 ntBASIC13.53□□□□□ -0.24
RFT1Q96AA3 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 SLC9A7P1-202ENST00000556476 2239 ntBASIC13.53□□□□□ -0.24
RFT1Q96AA3 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
RFT1Q96AA3 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
RFT1Q96AA3 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
RFT1Q96AA3 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
RFT1Q96AA3 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RFT1Q96AA3 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RFT1Q96AA3 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.53□□□□□ -0.24
RFT1Q96AA3 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
RFT1Q96AA3 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
RFT1Q96AA3 AC011474.4-201ENST00000623523 2076 ntBASIC13.52□□□□□ -0.24
RFT1Q96AA3 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
RFT1Q96AA3 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC13.52□□□□□ -0.24
RFT1Q96AA3 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
RFT1Q96AA3 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC13.52□□□□□ -0.24
RFT1Q96AA3 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
RFT1Q96AA3 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13.52□□□□□ -0.24
RFT1Q96AA3 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
RFT1Q96AA3 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
RFT1Q96AA3 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
RFT1Q96AA3 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
RFT1Q96AA3 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
RFT1Q96AA3 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RFT1Q96AA3 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RFT1Q96AA3 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RFT1Q96AA3 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RFT1Q96AA3 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RFT1Q96AA3 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC13.52□□□□□ -0.25
RFT1Q96AA3 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.25
RFT1Q96AA3 ACTG1P14-201ENST00000446382 1122 ntBASIC13.52□□□□□ -0.25
RFT1Q96AA3 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC13.52□□□□□ -0.25
RFT1Q96AA3 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC13.52□□□□□ -0.25
RFT1Q96AA3 PUS1-205ENST00000535067 838 ntTSL 3 BASIC13.52□□□□□ -0.25
RFT1Q96AA3 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC13.52□□□□□ -0.25
RFT1Q96AA3 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
RFT1Q96AA3 SPIB-207ENST00000597855 564 ntTSL 4 BASIC13.52□□□□□ -0.25
RFT1Q96AA3 MTDHP5-201ENST00000598980 586 ntBASIC13.52□□□□□ -0.25
RFT1Q96AA3 AC097359.3-201ENST00000603982 1210 ntBASIC13.52□□□□□ -0.25
RFT1Q96AA3 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RFT1Q96AA3 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RFT1Q96AA3 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.52□□□□□ -0.25
RFT1Q96AA3 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC13.52□□□□□ -0.25
RFT1Q96AA3 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC13.52□□□□□ -0.25
RFT1Q96AA3 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RFT1Q96AA3 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC13.52□□□□□ -0.25
RFT1Q96AA3 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
RFT1Q96AA3 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC13.52□□□□□ -0.25
RFT1Q96AA3 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
RFT1Q96AA3 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC13.52□□□□□ -0.25
RFT1Q96AA3 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RFT1Q96AA3 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.52□□□□□ -0.25
RFT1Q96AA3 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.25
RFT1Q96AA3 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
RFT1Q96AA3 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC13.52□□□□□ -0.25
RFT1Q96AA3 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RFT1Q96AA3 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
RFT1Q96AA3 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC13.52□□□□□ -0.25
RFT1Q96AA3 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RFT1Q96AA3 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
RFT1Q96AA3 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC13.51□□□□□ -0.25
RFT1Q96AA3 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RFT1Q96AA3 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.51□□□□□ -0.25
RFT1Q96AA3 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
RFT1Q96AA3 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms