Protein–RNA interactions for Protein: Q8WWI5

SLC44A1, Choline transporter-like protein 1, humanhuman

Predictions only

Length 657 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A1Q8WWI5 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 AC211486.1-202ENST00000416371 468 ntBASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 AC004967.1-201ENST00000453589 447 ntBASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 AC211476.1-201ENST00000503899 468 ntBASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 AL137783.1-201ENST00000623494 1896 ntBASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SLC44A1Q8WWI5 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 AGGF1P1-201ENST00000509500 2073 ntBASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 AC093525.8-201ENST00000624099 1342 ntBASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 ZNF890P-202ENST00000530367 1156 ntBASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 AC044860.1-202ENST00000559481 777 ntBASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 CNTNAP3P2-201ENST00000617175 3861 ntBASIC15.21■□□□□ 0.03
SLC44A1Q8WWI5 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SLC44A1Q8WWI5 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SLC44A1Q8WWI5 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
SLC44A1Q8WWI5 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SLC44A1Q8WWI5 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.21■□□□□ 0.02
SLC44A1Q8WWI5 MST1P2-201ENST00000457982 2291 ntBASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 MBLAC2-202ENST00000514906 1936 ntBASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 AC092337.1-201ENST00000568699 1129 ntBASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 AP001160.2-201ENST00000596071 487 ntBASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 AC073592.8-201ENST00000624126 511 ntBASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
SLC44A1Q8WWI5 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms