Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 BTBD7P1-201ENST00000447253 1453 ntBASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 AC026748.1-201ENST00000624349 3251 ntBASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 BAD-202ENST00000394531 631 ntTSL 3 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 AL645937.2-201ENST00000396808 931 ntBASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 MPV17-208ENST00000405076 603 ntTSL 5 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 AC004967.1-201ENST00000453589 447 ntBASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 BAD-207ENST00000544785 525 ntTSL 3 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 AC140878.1-201ENST00000565277 250 ntBASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 AC092337.1-201ENST00000568699 1129 ntBASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 TP73-209ENST00000603362 1668 ntTSL 5 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 SON-203ENST00000381679 7860 ntTSL 5 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC54Q8NEL0 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms