Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC60Q8IWA6 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC60Q8IWA6 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC60Q8IWA6 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC60Q8IWA6 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC60Q8IWA6 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC16.77■□□□□ 0.27
CCDC60Q8IWA6 AC006486.2-201ENST00000624246 2199 ntBASIC16.77■□□□□ 0.27
CCDC60Q8IWA6 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC60Q8IWA6 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC60Q8IWA6 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC16.77■□□□□ 0.27
CCDC60Q8IWA6 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC16.77■□□□□ 0.27
CCDC60Q8IWA6 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 MIR1247-201ENST00000408206 136 ntBASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 AL358472.3-201ENST00000608147 415 ntBASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 ACE3P-201ENST00000423435 1973 ntBASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC60Q8IWA6 AC092384.3-202ENST00000564646 2873 ntBASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 LINC00554-201ENST00000564841 3011 ntBASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 AC003102.2-201ENST00000589195 1469 ntBASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 CD74-212ENST00000524315 584 ntTSL 5 BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC60Q8IWA6 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms