Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 HLA-DMA-203ENST00000395305 777 ntBASIC20.18■□□□□ 0.82
NPHP3Q7Z494 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 CR383656.3-201ENST00000551315 183 ntBASIC20.18■□□□□ 0.82
NPHP3Q7Z494 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 MARK2P16-201ENST00000605714 1723 ntBASIC20.18■□□□□ 0.82
NPHP3Q7Z494 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 F11R-206ENST00000621309 4770 ntTSL 5 BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 AHCYP4-201ENST00000419201 1315 ntBASIC20.18■□□□□ 0.82
NPHP3Q7Z494 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 AC079328.2-201ENST00000561241 3354 ntBASIC20.17■□□□□ 0.82
NPHP3Q7Z494 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 PTPA-215ENST00000432124 567 ntTSL 4 BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 LINC00634-202ENST00000505157 222 ntBASIC20.17■□□□□ 0.82
NPHP3Q7Z494 AC084752.1-201ENST00000509766 622 ntBASIC20.17■□□□□ 0.82
NPHP3Q7Z494 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 MIR4472-1-201ENST00000584349 80 ntBASIC20.17■□□□□ 0.82
NPHP3Q7Z494 AC006158.1-201ENST00000610661 249 ntBASIC20.17■□□□□ 0.82
NPHP3Q7Z494 ETV2-207ENST00000619399 994 ntTSL 5 BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 AC073592.2-201ENST00000623062 780 ntBASIC20.17■□□□□ 0.82
NPHP3Q7Z494 AL359258.3-201ENST00000622910 2331 ntBASIC20.17■□□□□ 0.82
NPHP3Q7Z494 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC20.17■□□□□ 0.82
NPHP3Q7Z494 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 HLA-DQB1-202ENST00000399079 1501 ntBASIC20.16■□□□□ 0.82
NPHP3Q7Z494 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 AC131206.1-201ENST00000538078 1211 ntBASIC20.16■□□□□ 0.82
NPHP3Q7Z494 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC20.16■□□□□ 0.82
NPHP3Q7Z494 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 NHP2-202ENST00000314397 599 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 GCSHP3-201ENST00000431120 391 ntBASIC20.15■□□□□ 0.82
NPHP3Q7Z494 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 AGPAT5P1-201ENST00000455855 1019 ntBASIC20.15■□□□□ 0.82
NPHP3Q7Z494 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 AC011247.3-201ENST00000603297 438 ntBASIC20.15■□□□□ 0.82
NPHP3Q7Z494 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 SALL4P5-201ENST00000419001 1760 ntBASIC20.15■□□□□ 0.82
NPHP3Q7Z494 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms