Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
KRT39Q6A163 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
KRT39Q6A163 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC16.37■□□□□ 0.21
KRT39Q6A163 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
KRT39Q6A163 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
KRT39Q6A163 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.37■□□□□ 0.21
KRT39Q6A163 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC16.37■□□□□ 0.21
KRT39Q6A163 BAATP1-201ENST00000412284 1225 ntBASIC16.37■□□□□ 0.21
KRT39Q6A163 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC16.37■□□□□ 0.21
KRT39Q6A163 AC012441.1-201ENST00000446669 685 ntBASIC16.37■□□□□ 0.21
KRT39Q6A163 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.37■□□□□ 0.21
KRT39Q6A163 PTP4A1P2-201ENST00000546033 454 ntBASIC16.37■□□□□ 0.21
KRT39Q6A163 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.37■□□□□ 0.21
KRT39Q6A163 POLE2-203ENST00000553805 496 ntTSL 2 BASIC16.37■□□□□ 0.21
KRT39Q6A163 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC16.37■□□□□ 0.21
KRT39Q6A163 MIR5189-201ENST00000577370 114 ntBASIC16.37■□□□□ 0.21
KRT39Q6A163 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC16.37■□□□□ 0.21
KRT39Q6A163 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16.37■□□□□ 0.21
KRT39Q6A163 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
KRT39Q6A163 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
KRT39Q6A163 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
KRT39Q6A163 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC16.37■□□□□ 0.21
KRT39Q6A163 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
KRT39Q6A163 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC16.37■□□□□ 0.21
KRT39Q6A163 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
KRT39Q6A163 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
KRT39Q6A163 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC16.37■□□□□ 0.21
KRT39Q6A163 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
KRT39Q6A163 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC16.37■□□□□ 0.21
KRT39Q6A163 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
KRT39Q6A163 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
KRT39Q6A163 AC018529.2-202ENST00000611482 3087 ntBASIC16.37■□□□□ 0.21
KRT39Q6A163 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
KRT39Q6A163 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
KRT39Q6A163 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.36■□□□□ 0.21
KRT39Q6A163 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC16.36■□□□□ 0.21
KRT39Q6A163 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
KRT39Q6A163 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
KRT39Q6A163 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
KRT39Q6A163 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.36■□□□□ 0.21
KRT39Q6A163 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC16.36■□□□□ 0.21
KRT39Q6A163 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
KRT39Q6A163 AC126755.1-201ENST00000525846 6405 ntBASIC16.36■□□□□ 0.21
KRT39Q6A163 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC16.36■□□□□ 0.21
KRT39Q6A163 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
KRT39Q6A163 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.36■□□□□ 0.21
KRT39Q6A163 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.36■□□□□ 0.21
KRT39Q6A163 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.36■□□□□ 0.21
KRT39Q6A163 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
KRT39Q6A163 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC16.36■□□□□ 0.21
KRT39Q6A163 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC16.36■□□□□ 0.21
KRT39Q6A163 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
KRT39Q6A163 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
KRT39Q6A163 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
KRT39Q6A163 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
KRT39Q6A163 RN7SL837P-201ENST00000463010 287 ntBASIC16.36■□□□□ 0.21
KRT39Q6A163 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
KRT39Q6A163 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
KRT39Q6A163 AP005018.1-201ENST00000525475 301 ntBASIC16.36■□□□□ 0.21
KRT39Q6A163 TDH-203ENST00000531764 1110 ntBASIC16.36■□□□□ 0.21
KRT39Q6A163 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC16.36■□□□□ 0.21
KRT39Q6A163 AL596325.1-201ENST00000563991 1082 ntBASIC16.36■□□□□ 0.21
KRT39Q6A163 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
KRT39Q6A163 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC16.36■□□□□ 0.21
KRT39Q6A163 AL358472.5-202ENST00000641448 1267 ntBASIC16.36■□□□□ 0.21
KRT39Q6A163 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
KRT39Q6A163 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
KRT39Q6A163 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
KRT39Q6A163 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
KRT39Q6A163 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.36■□□□□ 0.21
KRT39Q6A163 AC134312.5-201ENST00000568031 1313 ntBASIC16.36■□□□□ 0.21
KRT39Q6A163 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
KRT39Q6A163 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC16.36■□□□□ 0.21
KRT39Q6A163 AL390755.1-201ENST00000623716 2027 ntBASIC16.36■□□□□ 0.21
KRT39Q6A163 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC16.36■□□□□ 0.21
KRT39Q6A163 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
KRT39Q6A163 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
KRT39Q6A163 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
KRT39Q6A163 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.36■□□□□ 0.21
KRT39Q6A163 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
KRT39Q6A163 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC16.36■□□□□ 0.21
KRT39Q6A163 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
KRT39Q6A163 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
KRT39Q6A163 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
KRT39Q6A163 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
KRT39Q6A163 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
KRT39Q6A163 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.35■□□□□ 0.21
KRT39Q6A163 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
KRT39Q6A163 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.35■□□□□ 0.21
KRT39Q6A163 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
KRT39Q6A163 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
KRT39Q6A163 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
KRT39Q6A163 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
KRT39Q6A163 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
KRT39Q6A163 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
KRT39Q6A163 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
KRT39Q6A163 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
KRT39Q6A163 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
KRT39Q6A163 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.35■□□□□ 0.21
KRT39Q6A163 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms