Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
TFF3Q07654 FLJ16779-201ENST00000612722 7638 ntBASIC13.32□□□□□ -0.28
TFF3Q07654 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
TFF3Q07654 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
TFF3Q07654 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
TFF3Q07654 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
TFF3Q07654 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
TFF3Q07654 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC13.31□□□□□ -0.28
TFF3Q07654 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
TFF3Q07654 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC13.31□□□□□ -0.28
TFF3Q07654 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 AC073347.1-201ENST00000421633 2643 ntBASIC13.31□□□□□ -0.28
TFF3Q07654 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC13.31□□□□□ -0.28
TFF3Q07654 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.31□□□□□ -0.28
TFF3Q07654 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
TFF3Q07654 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
TFF3Q07654 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
TFF3Q07654 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 AC091046.1-201ENST00000331871 207 ntBASIC13.31□□□□□ -0.28
TFF3Q07654 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
TFF3Q07654 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC13.31□□□□□ -0.28
TFF3Q07654 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC13.31□□□□□ -0.28
TFF3Q07654 AL008707.1-201ENST00000422498 534 ntBASIC13.31□□□□□ -0.28
TFF3Q07654 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 AC100850.1-201ENST00000506768 649 ntBASIC13.31□□□□□ -0.28
TFF3Q07654 AC245884.6-201ENST00000515672 1067 ntBASIC13.31□□□□□ -0.28
TFF3Q07654 AC022616.1-201ENST00000518688 554 ntBASIC13.31□□□□□ -0.28
TFF3Q07654 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC13.31□□□□□ -0.28
TFF3Q07654 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC13.31□□□□□ -0.28
TFF3Q07654 AL645939.5-201ENST00000606834 243 ntBASIC13.31□□□□□ -0.28
TFF3Q07654 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
TFF3Q07654 AC022748.3-201ENST00000621828 275 ntBASIC13.31□□□□□ -0.28
TFF3Q07654 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
TFF3Q07654 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
TFF3Q07654 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC13.31□□□□□ -0.28
TFF3Q07654 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
TFF3Q07654 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC13.31□□□□□ -0.28
TFF3Q07654 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
TFF3Q07654 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC13.31□□□□□ -0.28
TFF3Q07654 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
TFF3Q07654 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
TFF3Q07654 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
TFF3Q07654 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
TFF3Q07654 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
TFF3Q07654 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
TFF3Q07654 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
TFF3Q07654 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
TFF3Q07654 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
TFF3Q07654 TKT-202ENST00000423516 2075 ntTSL 2 BASIC13.3□□□□□ -0.28
TFF3Q07654 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC13.3□□□□□ -0.28
TFF3Q07654 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
TFF3Q07654 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
TFF3Q07654 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
TFF3Q07654 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
TFF3Q07654 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
TFF3Q07654 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC13.3□□□□□ -0.28
TFF3Q07654 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
TFF3Q07654 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC13.3□□□□□ -0.28
TFF3Q07654 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
TFF3Q07654 AC084364.1-201ENST00000551967 1556 ntBASIC13.3□□□□□ -0.28
TFF3Q07654 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
TFF3Q07654 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC13.3□□□□□ -0.28
TFF3Q07654 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC13.3□□□□□ -0.28
TFF3Q07654 AL136309.1-201ENST00000403917 691 ntBASIC13.3□□□□□ -0.28
TFF3Q07654 PTPA-217ENST00000434095 870 ntTSL 2 BASIC13.3□□□□□ -0.28
TFF3Q07654 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.3□□□□□ -0.28
TFF3Q07654 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
TFF3Q07654 MPRIPP1-201ENST00000452433 1089 ntBASIC13.3□□□□□ -0.28
TFF3Q07654 TMEM198B-204ENST00000484016 896 ntBASIC13.3□□□□□ -0.28
TFF3Q07654 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
TFF3Q07654 AC022217.1-201ENST00000521069 738 ntBASIC13.3□□□□□ -0.28
TFF3Q07654 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC13.3□□□□□ -0.28
TFF3Q07654 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC13.3□□□□□ -0.28
TFF3Q07654 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC13.3□□□□□ -0.28
TFF3Q07654 RN7SL774P-201ENST00000577467 290 ntBASIC13.3□□□□□ -0.28
TFF3Q07654 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
TFF3Q07654 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
TFF3Q07654 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.3□□□□□ -0.28
TFF3Q07654 ING5-213ENST00000636051 4199 ntTSL 5 BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms