Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
RNF4P78317 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.06□□□□□ -0.16
RNF4P78317 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 CNN2P8-201ENST00000421872 913 ntBASIC14.06□□□□□ -0.16
RNF4P78317 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.06□□□□□ -0.16
RNF4P78317 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.06□□□□□ -0.16
RNF4P78317 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.06□□□□□ -0.16
RNF4P78317 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.06□□□□□ -0.16
RNF4P78317 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
RNF4P78317 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.06□□□□□ -0.16
RNF4P78317 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
RNF4P78317 RN7SL48P-201ENST00000579283 293 ntBASIC14.06□□□□□ -0.16
RNF4P78317 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.06□□□□□ -0.16
RNF4P78317 AL359881.2-201ENST00000602973 570 ntBASIC14.06□□□□□ -0.16
RNF4P78317 AC133552.6-201ENST00000613406 534 ntBASIC14.06□□□□□ -0.16
RNF4P78317 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.06□□□□□ -0.16
RNF4P78317 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.06□□□□□ -0.16
RNF4P78317 REXO1L2P-201ENST00000425429 2069 ntBASIC14.06□□□□□ -0.16
RNF4P78317 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
RNF4P78317 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
RNF4P78317 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
RNF4P78317 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.06□□□□□ -0.16
RNF4P78317 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
RNF4P78317 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNF4P78317 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RNF4P78317 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
RNF4P78317 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.05□□□□□ -0.16
RNF4P78317 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
RNF4P78317 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNF4P78317 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.05□□□□□ -0.16
RNF4P78317 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.05□□□□□ -0.16
RNF4P78317 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.05□□□□□ -0.16
RNF4P78317 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNF4P78317 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNF4P78317 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNF4P78317 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNF4P78317 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNF4P78317 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
RNF4P78317 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
RNF4P78317 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.05□□□□□ -0.16
RNF4P78317 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.05□□□□□ -0.16
RNF4P78317 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
RNF4P78317 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RNF4P78317 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNF4P78317 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNF4P78317 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RNF4P78317 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RNF4P78317 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC14.05□□□□□ -0.16
RNF4P78317 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNF4P78317 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC14.05□□□□□ -0.16
RNF4P78317 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC14.05□□□□□ -0.16
RNF4P78317 FAM197Y7-201ENST00000432892 766 ntBASIC14.05□□□□□ -0.16
RNF4P78317 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.05□□□□□ -0.16
RNF4P78317 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.05□□□□□ -0.16
RNF4P78317 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC14.05□□□□□ -0.16
RNF4P78317 RNA5SP486-201ENST00000515961 83 ntBASIC14.05□□□□□ -0.16
RNF4P78317 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.05□□□□□ -0.16
RNF4P78317 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.05□□□□□ -0.16
RNF4P78317 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.05□□□□□ -0.16
RNF4P78317 AL008721.1-201ENST00000609964 604 ntBASIC14.05□□□□□ -0.16
RNF4P78317 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14.05□□□□□ -0.16
RNF4P78317 RHOXF1P1-202ENST00000635473 501 ntBASIC14.05□□□□□ -0.16
RNF4P78317 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.05□□□□□ -0.16
RNF4P78317 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.05□□□□□ -0.16
RNF4P78317 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.05□□□□□ -0.16
RNF4P78317 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.05□□□□□ -0.16
RNF4P78317 LILRP1-201ENST00000444199 1370 ntBASIC14.05□□□□□ -0.16
RNF4P78317 AC091951.1-201ENST00000512854 2465 ntBASIC14.05□□□□□ -0.16
RNF4P78317 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.05□□□□□ -0.16
RNF4P78317 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RNF4P78317 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNF4P78317 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNF4P78317 AC023157.3-201ENST00000619086 2088 ntBASIC14.05□□□□□ -0.16
RNF4P78317 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNF4P78317 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.05□□□□□ -0.16
RNF4P78317 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.05□□□□□ -0.16
RNF4P78317 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RNF4P78317 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
RNF4P78317 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.04□□□□□ -0.16
RNF4P78317 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
RNF4P78317 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.04□□□□□ -0.16
RNF4P78317 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
RNF4P78317 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms