Protein–RNA interactions for Protein: P58876

HIST1H2BD, Histone H2B type 1-D, humanhuman

Predictions only

Length 126 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H2BDP58876 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 PTPRN-202ENST00000409251 3622 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 ZNF568-206ENST00000455427 2378 ntTSL 2 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 AGAP12P-201ENST00000585227 2359 ntBASIC11.39□□□□□ -0.59
HIST1H2BDP58876 AC021752.1-202ENST00000613161 2398 ntTSL 2 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 MATN2-211ENST00000521689 3554 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 PLCB3-201ENST00000279230 4197 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 ARHGEF1-203ENST00000354532 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 CDK5RAP1-203ENST00000357886 2164 ntTSL 5 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 FAM78A-203ENST00000372271 3966 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 MIR662-201ENST00000384847 95 ntBASIC11.39□□□□□ -0.59
HIST1H2BDP58876 NFKB1-202ENST00000394820 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 DANCR-204ENST00000444958 709 ntTSL 3 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 AL158047.1-201ENST00000445918 881 ntBASIC11.39□□□□□ -0.59
HIST1H2BDP58876 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 AC009533.2-201ENST00000543664 586 ntBASIC11.39□□□□□ -0.59
HIST1H2BDP58876 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 METTL23-204ENST00000586752 904 ntTSL 2 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 BSG-214ENST00000614867 960 ntTSL 3 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 MIR6821-201ENST00000617625 74 ntBASIC11.39□□□□□ -0.59
HIST1H2BDP58876 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 SLC13A4-201ENST00000354042 2897 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 AGAP5-202ENST00000443782 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 AGAP4-203ENST00000448048 2439 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 LINC00638-201ENST00000555578 2518 ntBASIC11.39□□□□□ -0.59
HIST1H2BDP58876 PNPLA8-208ENST00000453144 3366 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 RIC8B-201ENST00000355478 3207 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 AC009501.1-201ENST00000429952 2069 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 LINC00846-201ENST00000334165 1778 ntTSL 2 BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
HIST1H2BDP58876 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 KLC2-206ENST00000417856 3015 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 SCNN1B-202ENST00000343070 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 TMBIM1-202ENST00000396809 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 SARDH-204ENST00000371872 3344 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 CACNB1-202ENST00000394303 3742 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 P4HB-223ENST00000576390 439 ntTSL 4 BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 AC011467.2-201ENST00000598425 242 ntBASIC11.38□□□□□ -0.59
HIST1H2BDP58876 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 INIP-203ENST00000374242 4233 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 SLC25A18-202ENST00000399813 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC11.38□□□□□ -0.59
HIST1H2BDP58876 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC11.38□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms