Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CR1P49238 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CR1P49238 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CR1P49238 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CR1P49238 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.4□□□□□ -0.26
CX3CR1P49238 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.4□□□□□ -0.26
CX3CR1P49238 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CR1P49238 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CR1P49238 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
CX3CR1P49238 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CR1P49238 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CR1P49238 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
CX3CR1P49238 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
CX3CR1P49238 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
CX3CR1P49238 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CX3CR1P49238 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
CX3CR1P49238 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
CX3CR1P49238 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC13.39□□□□□ -0.27
CX3CR1P49238 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 SYS1-203ENST00000414310 795 ntTSL 3 BASIC13.39□□□□□ -0.27
CX3CR1P49238 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 AC055876.3-201ENST00000431496 288 ntBASIC13.39□□□□□ -0.27
CX3CR1P49238 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 AL589987.1-201ENST00000453380 819 ntBASIC13.39□□□□□ -0.27
CX3CR1P49238 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 AC004066.1-201ENST00000502488 802 ntBASIC13.39□□□□□ -0.27
CX3CR1P49238 SPDYE18-201ENST00000510091 1050 ntBASIC13.39□□□□□ -0.27
CX3CR1P49238 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC13.39□□□□□ -0.27
CX3CR1P49238 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC13.39□□□□□ -0.27
CX3CR1P49238 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
CX3CR1P49238 PRR29-204ENST00000577953 565 ntTSL 4 BASIC13.39□□□□□ -0.27
CX3CR1P49238 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC13.39□□□□□ -0.27
CX3CR1P49238 AC138649.4-201ENST00000612222 287 ntBASIC13.39□□□□□ -0.27
CX3CR1P49238 AC093512.1-201ENST00000617969 520 ntBASIC13.39□□□□□ -0.27
CX3CR1P49238 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC13.39□□□□□ -0.27
CX3CR1P49238 AC007787.1-201ENST00000588095 1583 ntBASIC13.39□□□□□ -0.27
CX3CR1P49238 AC022144.1-201ENST00000602255 1580 ntBASIC13.39□□□□□ -0.27
CX3CR1P49238 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.39□□□□□ -0.27
CX3CR1P49238 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.39□□□□□ -0.27
CX3CR1P49238 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.39□□□□□ -0.27
CX3CR1P49238 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC13.39□□□□□ -0.27
CX3CR1P49238 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
CX3CR1P49238 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC13.39□□□□□ -0.27
CX3CR1P49238 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC13.39□□□□□ -0.27
CX3CR1P49238 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
CX3CR1P49238 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.39□□□□□ -0.27
CX3CR1P49238 AC005912.2-201ENST00000619492 2400 ntBASIC13.39□□□□□ -0.27
CX3CR1P49238 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.39□□□□□ -0.27
CX3CR1P49238 SLC9A7P1-202ENST00000556476 2239 ntBASIC13.39□□□□□ -0.27
CX3CR1P49238 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CR1P49238 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CR1P49238 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC13.38□□□□□ -0.27
CX3CR1P49238 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC13.38□□□□□ -0.27
CX3CR1P49238 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CR1P49238 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC13.38□□□□□ -0.27
CX3CR1P49238 INTS4P1-203ENST00000641008 3683 ntBASIC13.38□□□□□ -0.27
CX3CR1P49238 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.38□□□□□ -0.27
CX3CR1P49238 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
CX3CR1P49238 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CR1P49238 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CR1P49238 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CR1P49238 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
CX3CR1P49238 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CR1P49238 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC13.38□□□□□ -0.27
CX3CR1P49238 PNMT-202ENST00000394246 821 ntTSL 2 BASIC13.38□□□□□ -0.27
CX3CR1P49238 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC13.38□□□□□ -0.27
CX3CR1P49238 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC13.38□□□□□ -0.27
CX3CR1P49238 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC13.38□□□□□ -0.27
CX3CR1P49238 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC13.38□□□□□ -0.27
CX3CR1P49238 AL512638.1-201ENST00000457493 794 ntBASIC13.38□□□□□ -0.27
CX3CR1P49238 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms