Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 LINC00244-201ENST00000625073 613 ntBASIC17.37■□□□□ 0.37
SCN4AP35499 AC233280.19-201ENST00000633223 136 ntBASIC17.37■□□□□ 0.37
SCN4AP35499 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.37■□□□□ 0.37
SCN4AP35499 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC17.37■□□□□ 0.37
SCN4AP35499 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC17.37■□□□□ 0.37
SCN4AP35499 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SCN4AP35499 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
SCN4AP35499 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC17.36■□□□□ 0.37
SCN4AP35499 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SCN4AP35499 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SCN4AP35499 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.36■□□□□ 0.37
SCN4AP35499 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
SCN4AP35499 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
SCN4AP35499 PIFO-201ENST00000369737 746 ntTSL 2 BASIC17.36■□□□□ 0.37
SCN4AP35499 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SCN4AP35499 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC17.36■□□□□ 0.37
SCN4AP35499 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC17.36■□□□□ 0.37
SCN4AP35499 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC17.36■□□□□ 0.37
SCN4AP35499 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC17.36■□□□□ 0.37
SCN4AP35499 GOLGA2P7-209ENST00000560408 745 ntBASIC17.36■□□□□ 0.37
SCN4AP35499 MT2A-202ENST00000561491 581 ntTSL 2 BASIC17.36■□□□□ 0.37
SCN4AP35499 AC018846.1-201ENST00000568231 183 ntBASIC17.36■□□□□ 0.37
SCN4AP35499 AC090510.3-201ENST00000615831 821 ntBASIC17.36■□□□□ 0.37
SCN4AP35499 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
SCN4AP35499 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SCN4AP35499 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SCN4AP35499 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.36■□□□□ 0.37
SCN4AP35499 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SCN4AP35499 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.36■□□□□ 0.37
SCN4AP35499 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SCN4AP35499 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SCN4AP35499 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SCN4AP35499 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SCN4AP35499 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SCN4AP35499 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SCN4AP35499 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SCN4AP35499 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SCN4AP35499 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SCN4AP35499 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SCN4AP35499 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SCN4AP35499 FUCA1P1-201ENST00000374476 1351 ntBASIC17.36■□□□□ 0.37
SCN4AP35499 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SCN4AP35499 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
SCN4AP35499 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
SCN4AP35499 ACE-203ENST00000413513 2237 ntTSL 2 BASIC17.35■□□□□ 0.37
SCN4AP35499 GEMIN8P4-201ENST00000380526 729 ntBASIC17.35■□□□□ 0.37
SCN4AP35499 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC17.35■□□□□ 0.37
SCN4AP35499 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SCN4AP35499 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SCN4AP35499 BPIFB5P-201ENST00000457066 1099 ntBASIC17.35■□□□□ 0.37
SCN4AP35499 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC17.35■□□□□ 0.37
SCN4AP35499 NAA40-205ENST00000539656 577 ntTSL 4 BASIC17.35■□□□□ 0.37
SCN4AP35499 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC17.35■□□□□ 0.37
SCN4AP35499 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SCN4AP35499 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC17.35■□□□□ 0.37
SCN4AP35499 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC17.35■□□□□ 0.37
SCN4AP35499 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SCN4AP35499 NAV1-210ENST00000593583 726 ntBASIC17.35■□□□□ 0.37
SCN4AP35499 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.35■□□□□ 0.37
SCN4AP35499 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SCN4AP35499 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SCN4AP35499 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SCN4AP35499 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SCN4AP35499 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SCN4AP35499 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SCN4AP35499 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SCN4AP35499 AP002353.1-201ENST00000528257 1599 ntBASIC17.35■□□□□ 0.37
SCN4AP35499 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SCN4AP35499 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SCN4AP35499 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SCN4AP35499 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SCN4AP35499 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SCN4AP35499 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC17.35■□□□□ 0.37
SCN4AP35499 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.35■□□□□ 0.37
SCN4AP35499 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
SCN4AP35499 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC17.35■□□□□ 0.37
SCN4AP35499 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC17.35■□□□□ 0.37
SCN4AP35499 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC17.35■□□□□ 0.37
SCN4AP35499 RN7SL564P-201ENST00000496309 250 ntBASIC17.35■□□□□ 0.37
SCN4AP35499 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC17.35■□□□□ 0.37
SCN4AP35499 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC17.35■□□□□ 0.37
SCN4AP35499 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SCN4AP35499 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC17.35■□□□□ 0.37
SCN4AP35499 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SCN4AP35499 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SCN4AP35499 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC17.35■□□□□ 0.37
SCN4AP35499 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SCN4AP35499 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.34■□□□□ 0.37
SCN4AP35499 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SCN4AP35499 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC17.34■□□□□ 0.37
SCN4AP35499 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC17.34■□□□□ 0.37
SCN4AP35499 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SCN4AP35499 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SCN4AP35499 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SCN4AP35499 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SCN4AP35499 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
SCN4AP35499 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SCN4AP35499 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SCN4AP35499 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SCN4AP35499 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms