Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGA1P17096 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HMGA1P17096 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HMGA1P17096 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HMGA1P17096 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HMGA1P17096 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC15.55■□□□□ 0.08
HMGA1P17096 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC15.55■□□□□ 0.08
HMGA1P17096 FAM58BP-201ENST00000439056 645 ntBASIC15.55■□□□□ 0.08
HMGA1P17096 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGA1P17096 AC106794.1-201ENST00000506935 792 ntBASIC15.55■□□□□ 0.08
HMGA1P17096 MARK2P5-201ENST00000507649 634 ntBASIC15.55■□□□□ 0.08
HMGA1P17096 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
HMGA1P17096 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC15.55■□□□□ 0.08
HMGA1P17096 CHMP4BP1-201ENST00000556017 588 ntBASIC15.55■□□□□ 0.08
HMGA1P17096 VPS18-202ENST00000558474 873 ntTSL 3 BASIC15.55■□□□□ 0.08
HMGA1P17096 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC15.55■□□□□ 0.08
HMGA1P17096 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC15.55■□□□□ 0.08
HMGA1P17096 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HMGA1P17096 RN7SL774P-201ENST00000577467 290 ntBASIC15.55■□□□□ 0.08
HMGA1P17096 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGA1P17096 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC15.55■□□□□ 0.08
HMGA1P17096 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC15.55■□□□□ 0.08
HMGA1P17096 AC138627.1-207ENST00000641560 1006 ntBASIC15.55■□□□□ 0.08
HMGA1P17096 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGA1P17096 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGA1P17096 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGA1P17096 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.55■□□□□ 0.08
HMGA1P17096 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGA1P17096 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.55■□□□□ 0.08
HMGA1P17096 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.55■□□□□ 0.08
HMGA1P17096 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HMGA1P17096 AC013268.4-201ENST00000637413 2228 ntBASIC15.55■□□□□ 0.08
HMGA1P17096 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGA1P17096 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGA1P17096 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HMGA1P17096 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGA1P17096 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HMGA1P17096 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HMGA1P17096 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.55■□□□□ 0.08
HMGA1P17096 AMT-239ENST00000636865 1914 ntTSL 5 BASIC15.55■□□□□ 0.08
HMGA1P17096 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
HMGA1P17096 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HMGA1P17096 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGA1P17096 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.54■□□□□ 0.08
HMGA1P17096 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
HMGA1P17096 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGA1P17096 AC022532.1-201ENST00000624563 1728 ntBASIC15.54■□□□□ 0.08
HMGA1P17096 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGA1P17096 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.54■□□□□ 0.08
HMGA1P17096 AC073347.1-201ENST00000421633 2643 ntBASIC15.54■□□□□ 0.08
HMGA1P17096 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.54■□□□□ 0.08
HMGA1P17096 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGA1P17096 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGA1P17096 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGA1P17096 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
HMGA1P17096 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
HMGA1P17096 AC013726.1-201ENST00000563747 2285 ntBASIC15.54■□□□□ 0.08
HMGA1P17096 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGA1P17096 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
HMGA1P17096 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC15.54■□□□□ 0.08
HMGA1P17096 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGA1P17096 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
HMGA1P17096 AL662890.1-201ENST00000396818 632 ntBASIC15.54■□□□□ 0.08
HMGA1P17096 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC15.54■□□□□ 0.08
HMGA1P17096 VDAC1P1-201ENST00000439229 848 ntBASIC15.54■□□□□ 0.08
HMGA1P17096 OARD1-204ENST00000464633 717 ntTSL 2 BASIC15.54■□□□□ 0.08
HMGA1P17096 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC15.54■□□□□ 0.08
HMGA1P17096 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC15.54■□□□□ 0.08
HMGA1P17096 RHOQP1-201ENST00000555758 579 ntBASIC15.54■□□□□ 0.08
HMGA1P17096 SNORD3B-2-202ENST00000571722 791 ntBASIC15.54■□□□□ 0.08
HMGA1P17096 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
HMGA1P17096 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC15.54■□□□□ 0.08
HMGA1P17096 AC026740.1-201ENST00000607068 791 ntBASIC15.54■□□□□ 0.08
HMGA1P17096 AC090164.2-201ENST00000611487 516 ntBASIC15.54■□□□□ 0.08
HMGA1P17096 Z98259.2-201ENST00000641583 609 ntBASIC15.54■□□□□ 0.08
HMGA1P17096 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGA1P17096 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC15.54■□□□□ 0.08
HMGA1P17096 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HMGA1P17096 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGA1P17096 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGA1P17096 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGA1P17096 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGA1P17096 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HMGA1P17096 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGA1P17096 AC011270.2-201ENST00000624293 2550 ntBASIC15.53■□□□□ 0.08
HMGA1P17096 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
HMGA1P17096 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
HMGA1P17096 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGA1P17096 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HMGA1P17096 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HMGA1P17096 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
HMGA1P17096 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGA1P17096 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
HMGA1P17096 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC15.53■□□□□ 0.08
HMGA1P17096 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGA1P17096 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC15.53■□□□□ 0.08
HMGA1P17096 AL008707.1-201ENST00000422498 534 ntBASIC15.53■□□□□ 0.08
HMGA1P17096 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGA1P17096 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC15.53■□□□□ 0.08
HMGA1P17096 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms