Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 FAM90A23P-201ENST00000400136 1395 ntBASIC16.33■□□□□ 0.2
CHRNA1P02708 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CHRNA1P02708 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.2
CHRNA1P02708 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHRNA1P02708 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHRNA1P02708 AMT-204ENST00000427987 1646 ntTSL 5 BASIC16.33■□□□□ 0.2
CHRNA1P02708 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC16.33■□□□□ 0.2
CHRNA1P02708 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHRNA1P02708 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHRNA1P02708 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHRNA1P02708 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHRNA1P02708 AC023024.2-201ENST00000623561 1993 ntBASIC16.33■□□□□ 0.2
CHRNA1P02708 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.33■□□□□ 0.2
CHRNA1P02708 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.33■□□□□ 0.2
CHRNA1P02708 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHRNA1P02708 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHRNA1P02708 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA1P02708 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.32■□□□□ 0.2
CHRNA1P02708 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA1P02708 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
CHRNA1P02708 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.32■□□□□ 0.2
CHRNA1P02708 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA1P02708 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA1P02708 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CHRNA1P02708 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA1P02708 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
CHRNA1P02708 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA1P02708 PARVG-202ENST00000415224 999 ntTSL 2 BASIC16.32■□□□□ 0.2
CHRNA1P02708 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA1P02708 AC007274.2-201ENST00000421675 662 ntBASIC16.32■□□□□ 0.2
CHRNA1P02708 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.32■□□□□ 0.2
CHRNA1P02708 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA1P02708 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA1P02708 AC012441.2-201ENST00000444843 739 ntBASIC16.32■□□□□ 0.2
CHRNA1P02708 AL596276.2-201ENST00000447525 331 ntBASIC16.32■□□□□ 0.2
CHRNA1P02708 EEF1DP6-201ENST00000449232 372 ntBASIC16.32■□□□□ 0.2
CHRNA1P02708 TMEM198B-204ENST00000484016 896 ntBASIC16.32■□□□□ 0.2
CHRNA1P02708 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC16.32■□□□□ 0.2
CHRNA1P02708 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC16.32■□□□□ 0.2
CHRNA1P02708 SCARNA21-201ENST00000517026 139 ntBASIC16.32■□□□□ 0.2
CHRNA1P02708 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.32■□□□□ 0.2
CHRNA1P02708 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA1P02708 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC16.32■□□□□ 0.2
CHRNA1P02708 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA1P02708 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC16.32■□□□□ 0.2
CHRNA1P02708 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA1P02708 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA1P02708 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC16.32■□□□□ 0.2
CHRNA1P02708 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC16.32■□□□□ 0.2
CHRNA1P02708 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
CHRNA1P02708 AP000346.4-201ENST00000614827 381 ntBASIC16.32■□□□□ 0.2
CHRNA1P02708 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA1P02708 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA1P02708 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA1P02708 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
CHRNA1P02708 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA1P02708 AC136621.1-201ENST00000624017 2304 ntBASIC16.31■□□□□ 0.2
CHRNA1P02708 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.31■□□□□ 0.2
CHRNA1P02708 AC136759.1-202ENST00000530858 2194 ntBASIC16.31■□□□□ 0.2
CHRNA1P02708 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA1P02708 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA1P02708 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA1P02708 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA1P02708 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA1P02708 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA1P02708 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA1P02708 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA1P02708 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA1P02708 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA1P02708 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC16.31■□□□□ 0.2
CHRNA1P02708 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA1P02708 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA1P02708 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA1P02708 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA1P02708 MIR33B-201ENST00000385104 96 ntBASIC16.31■□□□□ 0.2
CHRNA1P02708 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CHRNA1P02708 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC16.31■□□□□ 0.2
CHRNA1P02708 TLE1P1-201ENST00000422965 589 ntBASIC16.31■□□□□ 0.2
CHRNA1P02708 ISCA2P1-201ENST00000425548 448 ntBASIC16.31■□□□□ 0.2
CHRNA1P02708 AC006335.1-201ENST00000445200 547 ntBASIC16.31■□□□□ 0.2
CHRNA1P02708 MAGEA5-201ENST00000446757 942 ntBASIC16.31■□□□□ 0.2
CHRNA1P02708 RCC2P8-201ENST00000502779 1035 ntBASIC16.31■□□□□ 0.2
CHRNA1P02708 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA1P02708 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA1P02708 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CHRNA1P02708 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CHRNA1P02708 PRKXP1-201ENST00000561423 1122 ntBASIC16.31■□□□□ 0.2
CHRNA1P02708 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC16.31■□□□□ 0.2
CHRNA1P02708 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA1P02708 PAM16-211ENST00000575848 518 ntTSL 3 BASIC16.31■□□□□ 0.2
CHRNA1P02708 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CHRNA1P02708 AC005962.1-201ENST00000584100 773 ntBASIC16.31■□□□□ 0.2
CHRNA1P02708 AC020922.3-201ENST00000595064 547 ntBASIC16.31■□□□□ 0.2
CHRNA1P02708 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CHRNA1P02708 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC16.31■□□□□ 0.2
CHRNA1P02708 BX088702.1-201ENST00000610784 235 ntBASIC16.31■□□□□ 0.2
CHRNA1P02708 AL353770.1-201ENST00000614915 403 ntBASIC16.31■□□□□ 0.2
CHRNA1P02708 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC16.31■□□□□ 0.2
CHRNA1P02708 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA1P02708 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms