Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC19.62■□□□□ 0.73
COL3A1P02461 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC19.62■□□□□ 0.73
COL3A1P02461 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL3A1P02461 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL3A1P02461 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL3A1P02461 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC19.62■□□□□ 0.73
COL3A1P02461 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
COL3A1P02461 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL3A1P02461 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL3A1P02461 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL3A1P02461 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL3A1P02461 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL3A1P02461 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC19.62■□□□□ 0.73
COL3A1P02461 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC19.62■□□□□ 0.73
COL3A1P02461 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL3A1P02461 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL3A1P02461 FAS-202ENST00000352159 1722 ntTSL 5 BASIC19.61■□□□□ 0.73
COL3A1P02461 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
COL3A1P02461 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC19.61■□□□□ 0.73
COL3A1P02461 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL3A1P02461 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC19.61■□□□□ 0.73
COL3A1P02461 AC009093.10-201ENST00000641956 1442 ntBASIC19.61■□□□□ 0.73
COL3A1P02461 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL3A1P02461 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL3A1P02461 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
COL3A1P02461 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC19.61■□□□□ 0.73
COL3A1P02461 HNRNPA1P27-201ENST00000412087 955 ntBASIC19.61■□□□□ 0.73
COL3A1P02461 AC012441.2-201ENST00000444843 739 ntBASIC19.61■□□□□ 0.73
COL3A1P02461 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC19.61■□□□□ 0.73
COL3A1P02461 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC19.61■□□□□ 0.73
COL3A1P02461 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC19.61■□□□□ 0.73
COL3A1P02461 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC19.61■□□□□ 0.73
COL3A1P02461 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
COL3A1P02461 AC027237.1-201ENST00000560942 655 ntBASIC19.61■□□□□ 0.73
COL3A1P02461 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL3A1P02461 DIO1-215ENST00000610607 796 ntTSL 5 BASIC19.61■□□□□ 0.73
COL3A1P02461 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL3A1P02461 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
COL3A1P02461 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
COL3A1P02461 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL3A1P02461 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL3A1P02461 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
COL3A1P02461 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC19.61■□□□□ 0.73
COL3A1P02461 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL3A1P02461 AC018629.1-201ENST00000623381 1736 ntBASIC19.61■□□□□ 0.73
COL3A1P02461 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL3A1P02461 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC19.61■□□□□ 0.73
COL3A1P02461 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
COL3A1P02461 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL3A1P02461 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL3A1P02461 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL3A1P02461 AC136759.1-202ENST00000530858 2194 ntBASIC19.61■□□□□ 0.73
COL3A1P02461 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC19.61■□□□□ 0.73
COL3A1P02461 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC19.61■□□□□ 0.73
COL3A1P02461 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL3A1P02461 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL3A1P02461 CRCP-204ENST00000398684 492 ntTSL 2 BASIC19.6■□□□□ 0.73
COL3A1P02461 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL3A1P02461 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC19.6■□□□□ 0.73
COL3A1P02461 CHMP4BP1-201ENST00000556017 588 ntBASIC19.6■□□□□ 0.73
COL3A1P02461 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC19.6■□□□□ 0.73
COL3A1P02461 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL3A1P02461 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL3A1P02461 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC19.6■□□□□ 0.73
COL3A1P02461 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
COL3A1P02461 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
COL3A1P02461 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
COL3A1P02461 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL3A1P02461 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL3A1P02461 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL3A1P02461 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
COL3A1P02461 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL3A1P02461 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL3A1P02461 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL3A1P02461 AC144522.1-201ENST00000625111 1658 ntBASIC19.6■□□□□ 0.73
COL3A1P02461 AMT-204ENST00000427987 1646 ntTSL 5 BASIC19.6■□□□□ 0.73
COL3A1P02461 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL3A1P02461 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL3A1P02461 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
COL3A1P02461 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
COL3A1P02461 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL3A1P02461 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC19.6■□□□□ 0.73
COL3A1P02461 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC19.6■□□□□ 0.73
COL3A1P02461 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL3A1P02461 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC19.6■□□□□ 0.73
COL3A1P02461 SLC16A6P1-201ENST00000413214 1059 ntBASIC19.6■□□□□ 0.73
COL3A1P02461 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC19.6■□□□□ 0.73
COL3A1P02461 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL3A1P02461 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC19.6■□□□□ 0.73
COL3A1P02461 AC021723.1-201ENST00000486306 515 ntBASIC19.6■□□□□ 0.73
COL3A1P02461 AC125604.1-201ENST00000496255 707 ntBASIC19.6■□□□□ 0.73
COL3A1P02461 RCC2P8-201ENST00000502779 1035 ntBASIC19.6■□□□□ 0.73
COL3A1P02461 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC19.6■□□□□ 0.73
COL3A1P02461 AC103810.3-201ENST00000583567 96 ntBASIC19.6■□□□□ 0.73
COL3A1P02461 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC19.6■□□□□ 0.73
COL3A1P02461 AL606495.2-201ENST00000605867 535 ntBASIC19.6■□□□□ 0.73
COL3A1P02461 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC19.6■□□□□ 0.73
COL3A1P02461 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL3A1P02461 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL3A1P02461 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms