Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 KLK8-202ENST00000320838 456 ntTSL 5 BASIC12.99□□□□□ -0.33
SDCBPO00560 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
SDCBPO00560 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
SDCBPO00560 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC12.99□□□□□ -0.33
SDCBPO00560 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC12.99□□□□□ -0.33
SDCBPO00560 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC12.99□□□□□ -0.33
SDCBPO00560 CNN2P2-201ENST00000443536 909 ntBASIC12.99□□□□□ -0.33
SDCBPO00560 CNN2P3-201ENST00000450201 906 ntBASIC12.99□□□□□ -0.33
SDCBPO00560 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC12.99□□□□□ -0.33
SDCBPO00560 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC12.99□□□□□ -0.33
SDCBPO00560 SATB1-217ENST00000493952 626 ntTSL 3 BASIC12.99□□□□□ -0.33
SDCBPO00560 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC12.99□□□□□ -0.33
SDCBPO00560 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC12.99□□□□□ -0.33
SDCBPO00560 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC12.99□□□□□ -0.33
SDCBPO00560 AC004449.1-201ENST00000564240 433 ntBASIC12.99□□□□□ -0.33
SDCBPO00560 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC12.99□□□□□ -0.33
SDCBPO00560 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC12.99□□□□□ -0.33
SDCBPO00560 AL136317.3-201ENST00000618497 906 ntBASIC12.99□□□□□ -0.33
SDCBPO00560 AP001267.2-201ENST00000532619 2086 ntBASIC12.99□□□□□ -0.33
SDCBPO00560 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SDCBPO00560 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SDCBPO00560 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
SDCBPO00560 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SDCBPO00560 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC12.99□□□□□ -0.33
SDCBPO00560 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SDCBPO00560 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SDCBPO00560 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SDCBPO00560 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
SDCBPO00560 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SDCBPO00560 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
SDCBPO00560 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC12.99□□□□□ -0.33
SDCBPO00560 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
SDCBPO00560 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
SDCBPO00560 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC12.99□□□□□ -0.33
SDCBPO00560 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
SDCBPO00560 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
SDCBPO00560 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC12.98□□□□□ -0.33
SDCBPO00560 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC12.98□□□□□ -0.33
SDCBPO00560 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC12.98□□□□□ -0.33
SDCBPO00560 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
SDCBPO00560 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC12.98□□□□□ -0.33
SDCBPO00560 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
SDCBPO00560 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC12.98□□□□□ -0.33
SDCBPO00560 HIST3H2BA-201ENST00000436555 524 ntBASIC12.98□□□□□ -0.33
SDCBPO00560 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC12.98□□□□□ -0.33
SDCBPO00560 PTK7-212ENST00000476760 902 ntTSL 2 BASIC12.98□□□□□ -0.33
SDCBPO00560 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 HLA-J-203ENST00000494367 1087 ntBASIC12.98□□□□□ -0.33
SDCBPO00560 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC12.98□□□□□ -0.33
SDCBPO00560 AC109322.1-201ENST00000524499 1264 ntBASIC12.98□□□□□ -0.33
SDCBPO00560 VPS29-207ENST00000549970 818 ntTSL 3 BASIC12.98□□□□□ -0.33
SDCBPO00560 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
SDCBPO00560 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC12.98□□□□□ -0.33
SDCBPO00560 AC011467.4-201ENST00000594891 528 ntBASIC12.98□□□□□ -0.33
SDCBPO00560 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
SDCBPO00560 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC12.98□□□□□ -0.33
SDCBPO00560 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC12.98□□□□□ -0.33
SDCBPO00560 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC12.98□□□□□ -0.33
SDCBPO00560 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC12.98□□□□□ -0.33
SDCBPO00560 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC12.98□□□□□ -0.33
SDCBPO00560 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SDCBPO00560 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
SDCBPO00560 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
SDCBPO00560 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms