Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 AC018665.1-201ENST00000622927 1362 ntBASIC14.64□□□□□ -0.07
SLC28A1O00337 AL157414.3-201ENST00000624276 1954 ntBASIC14.64□□□□□ -0.07
SLC28A1O00337 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
SLC28A1O00337 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.64□□□□□ -0.07
SLC28A1O00337 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.64□□□□□ -0.07
SLC28A1O00337 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.64□□□□□ -0.07
SLC28A1O00337 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.64□□□□□ -0.07
SLC28A1O00337 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.64□□□□□ -0.07
SLC28A1O00337 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.64□□□□□ -0.07
SLC28A1O00337 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.64□□□□□ -0.07
SLC28A1O00337 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.64□□□□□ -0.07
SLC28A1O00337 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.64□□□□□ -0.07
SLC28A1O00337 AC009407.1-201ENST00000568958 598 ntBASIC14.64□□□□□ -0.07
SLC28A1O00337 AC036164.1-201ENST00000570544 333 ntBASIC14.64□□□□□ -0.07
SLC28A1O00337 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.64□□□□□ -0.07
SLC28A1O00337 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 DRD5P1-201ENST00000456605 1438 ntBASIC14.64□□□□□ -0.07
SLC28A1O00337 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.64□□□□□ -0.07
SLC28A1O00337 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.64□□□□□ -0.07
SLC28A1O00337 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
SLC28A1O00337 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.64□□□□□ -0.07
SLC28A1O00337 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
SLC28A1O00337 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.64□□□□□ -0.07
SLC28A1O00337 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.64□□□□□ -0.07
SLC28A1O00337 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.64□□□□□ -0.07
SLC28A1O00337 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
SLC28A1O00337 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SLC28A1O00337 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.63□□□□□ -0.07
SLC28A1O00337 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SLC28A1O00337 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SLC28A1O00337 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
SLC28A1O00337 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.63□□□□□ -0.07
SLC28A1O00337 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SLC28A1O00337 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.63□□□□□ -0.07
SLC28A1O00337 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
SLC28A1O00337 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.63□□□□□ -0.07
SLC28A1O00337 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SLC28A1O00337 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.63□□□□□ -0.07
SLC28A1O00337 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SLC28A1O00337 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.63□□□□□ -0.07
SLC28A1O00337 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.63□□□□□ -0.07
SLC28A1O00337 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SLC28A1O00337 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SLC28A1O00337 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SLC28A1O00337 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.63□□□□□ -0.07
SLC28A1O00337 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
SLC28A1O00337 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.63□□□□□ -0.07
SLC28A1O00337 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SLC28A1O00337 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.63□□□□□ -0.07
SLC28A1O00337 AL353779.1-201ENST00000434793 351 ntBASIC14.63□□□□□ -0.07
SLC28A1O00337 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.63□□□□□ -0.07
SLC28A1O00337 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.63□□□□□ -0.07
SLC28A1O00337 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.63□□□□□ -0.07
SLC28A1O00337 FAM86LP-201ENST00000478302 853 ntBASIC14.63□□□□□ -0.07
SLC28A1O00337 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.63□□□□□ -0.07
SLC28A1O00337 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.63□□□□□ -0.07
SLC28A1O00337 AC135586.1-201ENST00000539323 574 ntBASIC14.63□□□□□ -0.07
SLC28A1O00337 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.63□□□□□ -0.07
SLC28A1O00337 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC14.63□□□□□ -0.07
SLC28A1O00337 AP001160.2-201ENST00000596071 487 ntBASIC14.63□□□□□ -0.07
SLC28A1O00337 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SLC28A1O00337 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SLC28A1O00337 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.63□□□□□ -0.07
SLC28A1O00337 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SLC28A1O00337 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.63□□□□□ -0.07
SLC28A1O00337 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
SLC28A1O00337 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SLC28A1O00337 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
SLC28A1O00337 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SLC28A1O00337 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.63□□□□□ -0.07
SLC28A1O00337 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SLC28A1O00337 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
SLC28A1O00337 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
SLC28A1O00337 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.62□□□□□ -0.07
SLC28A1O00337 AL138799.1-201ENST00000448213 1675 ntBASIC14.62□□□□□ -0.07
SLC28A1O00337 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SLC28A1O00337 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SLC28A1O00337 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SLC28A1O00337 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.62□□□□□ -0.07
SLC28A1O00337 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SLC28A1O00337 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SLC28A1O00337 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SLC28A1O00337 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SLC28A1O00337 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SLC28A1O00337 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms