Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 AZGP1P1-201ENST00000411909 902 ntBASIC11.16□□□□□ -0.62
SMKR1H3BMG3 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 EEF1DP4-201ENST00000446006 880 ntBASIC11.16□□□□□ -0.62
SMKR1H3BMG3 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 AL139010.1-201ENST00000454878 894 ntBASIC11.16□□□□□ -0.62
SMKR1H3BMG3 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 AC096734.2-201ENST00000562054 433 ntBASIC11.16□□□□□ -0.62
SMKR1H3BMG3 PRELID1P1-202ENST00000567272 903 ntBASIC11.16□□□□□ -0.62
SMKR1H3BMG3 TCAP-202ENST00000578283 583 ntTSL 5 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 AC073389.1-201ENST00000595595 795 ntBASIC11.16□□□□□ -0.62
SMKR1H3BMG3 IFNL4P1-201ENST00000607083 540 ntBASIC11.16□□□□□ -0.62
SMKR1H3BMG3 AL161645.1-201ENST00000622716 1255 ntBASIC11.16□□□□□ -0.62
SMKR1H3BMG3 AC007064.4-201ENST00000637740 555 ntBASIC11.16□□□□□ -0.62
SMKR1H3BMG3 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 TNN-202ENST00000621086 4234 ntTSL 5 BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 INVS-201ENST00000262456 2968 ntTSL 5 BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 AC136604.1-201ENST00000418535 575 ntBASIC11.15□□□□□ -0.62
SMKR1H3BMG3 RHOQP3-201ENST00000437982 621 ntBASIC11.15□□□□□ -0.62
SMKR1H3BMG3 HCG4B-203ENST00000450128 991 ntBASIC11.15□□□□□ -0.62
SMKR1H3BMG3 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 AC105233.2-201ENST00000523697 349 ntBASIC11.15□□□□□ -0.62
SMKR1H3BMG3 AF228730.5-201ENST00000530288 346 ntBASIC11.15□□□□□ -0.62
SMKR1H3BMG3 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 MED16-214ENST00000617672 554 ntTSL 5 BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 TP73-AS1-207ENST00000624167 988 ntBASIC11.15□□□□□ -0.62
SMKR1H3BMG3 SERF2-217ENST00000630046 862 ntTSL 5 BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 REXO1L4P-201ENST00000605109 1937 ntBASIC11.15□□□□□ -0.62
SMKR1H3BMG3 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC11.15□□□□□ -0.62
SMKR1H3BMG3 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.63
SMKR1H3BMG3 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC11.15□□□□□ -0.63
SMKR1H3BMG3 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
SMKR1H3BMG3 AC019294.4-201ENST00000561777 2905 ntBASIC11.15□□□□□ -0.63
SMKR1H3BMG3 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.63
SMKR1H3BMG3 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.63
SMKR1H3BMG3 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 BSG-215ENST00000618006 1329 ntTSL 2 BASIC11.14□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms