Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA2Q9Y261 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
FOXA2Q9Y261 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA2Q9Y261 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
FOXA2Q9Y261 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA2Q9Y261 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA2Q9Y261 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC12.33□□□□□ -0.44
FOXA2Q9Y261 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA2Q9Y261 AC018442.1-201ENST00000421439 2061 ntBASIC12.33□□□□□ -0.44
FOXA2Q9Y261 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC12.33□□□□□ -0.44
FOXA2Q9Y261 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 MTHFR-210ENST00000641407 2387 ntBASIC12.32□□□□□ -0.44
FOXA2Q9Y261 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 UGT1A2P-201ENST00000454886 866 ntBASIC12.32□□□□□ -0.44
FOXA2Q9Y261 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 MIR4745-201ENST00000577608 62 ntBASIC12.32□□□□□ -0.44
FOXA2Q9Y261 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 AC004233.3-201ENST00000607794 1269 ntBASIC12.32□□□□□ -0.44
FOXA2Q9Y261 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 SF1-209ENST00000433274 2317 ntTSL 2 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA2Q9Y261 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 BX640514.1-201ENST00000583223 1918 ntBASIC12.31□□□□□ -0.44
FOXA2Q9Y261 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 OSM-203ENST00000403463 464 ntTSL 3 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 AC093004.1-201ENST00000508850 424 ntBASIC12.31□□□□□ -0.44
FOXA2Q9Y261 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 TPRX2P-201ENST00000535362 881 ntBASIC12.31□□□□□ -0.44
FOXA2Q9Y261 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 AC092364.2-202ENST00000597012 1073 ntBASIC12.31□□□□□ -0.44
FOXA2Q9Y261 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC12.31□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms