Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 TBC1D3J-201ENST00000620719 1426 ntBASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 AGK-211ENST00000629555 2765 ntTSL 5 BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 IDS-203ENST00000428056 1213 ntTSL 2 BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 CASP16P-204ENST00000635032 809 ntBASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC28.45■■■□□ 2.15
SHROOM4Q9ULL8 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
SHROOM4Q9ULL8 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
SHROOM4Q9ULL8 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC28.45■■■□□ 2.15
SHROOM4Q9ULL8 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
SHROOM4Q9ULL8 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC28.45■■■□□ 2.15
SHROOM4Q9ULL8 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC28.45■■■□□ 2.15
SHROOM4Q9ULL8 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC28.45■■■□□ 2.15
SHROOM4Q9ULL8 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
SHROOM4Q9ULL8 AC020910.5-201ENST00000623668 1865 ntBASIC28.45■■■□□ 2.14
SHROOM4Q9ULL8 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
SHROOM4Q9ULL8 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
SHROOM4Q9ULL8 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
SHROOM4Q9ULL8 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC28.45■■■□□ 2.14
SHROOM4Q9ULL8 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC28.45■■■□□ 2.14
SHROOM4Q9ULL8 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
SHROOM4Q9ULL8 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC28.45■■■□□ 2.14
SHROOM4Q9ULL8 AC010234.1-201ENST00000494599 870 ntBASIC28.45■■■□□ 2.14
SHROOM4Q9ULL8 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC28.45■■■□□ 2.14
SHROOM4Q9ULL8 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
SHROOM4Q9ULL8 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.14
SHROOM4Q9ULL8 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
SHROOM4Q9ULL8 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC28.45■■■□□ 2.14
SHROOM4Q9ULL8 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC28.45■■■□□ 2.14
SHROOM4Q9ULL8 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
SHROOM4Q9ULL8 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 AC020658.6-201ENST00000623564 1870 ntBASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 FUK-207ENST00000571514 3054 ntTSL 2 BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 AC010141.1-201ENST00000411585 623 ntBASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 HNRNPA1P36-201ENST00000521313 955 ntBASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 TPM1-223ENST00000560445 485 ntTSL 3 BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 AC009084.3-201ENST00000623356 437 ntBASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 AP000593.2-201ENST00000542775 1433 ntBASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 AP000845.1-201ENST00000581677 2131 ntBASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC28.44■■■□□ 2.14
SHROOM4Q9ULL8 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SHROOM4Q9ULL8 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SHROOM4Q9ULL8 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SHROOM4Q9ULL8 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC28.43■■■□□ 2.14
SHROOM4Q9ULL8 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SHROOM4Q9ULL8 CYP51A1P3-201ENST00000400072 1428 ntBASIC28.43■■■□□ 2.14
SHROOM4Q9ULL8 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SHROOM4Q9ULL8 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC28.43■■■□□ 2.14
SHROOM4Q9ULL8 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SHROOM4Q9ULL8 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SHROOM4Q9ULL8 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC28.43■■■□□ 2.14
SHROOM4Q9ULL8 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC28.43■■■□□ 2.14
SHROOM4Q9ULL8 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
SHROOM4Q9ULL8 NAP1L6-202ENST00000641404 1222 ntBASIC28.43■■■□□ 2.14
SHROOM4Q9ULL8 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
SHROOM4Q9ULL8 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC28.43■■■□□ 2.14
SHROOM4Q9ULL8 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SHROOM4Q9ULL8 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC28.43■■■□□ 2.14
SHROOM4Q9ULL8 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 AC011840.2-201ENST00000563063 1520 ntBASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC28.42■■■□□ 2.14
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms