Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 AL359881.3-201ENST00000602640 1721 ntBASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 AC087386.2-201ENST00000623212 4637 ntBASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 TNN-203ENST00000622870 3719 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
CCDC39Q9UFE4 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 METTL21AP1-201ENST00000438852 635 ntBASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 SLED1-202ENST00000512051 380 ntBASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 AL512361.1-201ENST00000554200 418 ntBASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 AL158211.3-201ENST00000607385 239 ntBASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC39Q9UFE4 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms