Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 AC023090.2-201ENST00000625182 2110 ntBASIC16.25■□□□□ 0.19
CNTN3Q9P232 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 SERF2-209ENST00000409646 559 ntTSL 4 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 CHMP1AP1-201ENST00000445563 662 ntBASIC16.25■□□□□ 0.19
CNTN3Q9P232 RPSAP36-202ENST00000494591 1261 ntBASIC16.25■□□□□ 0.19
CNTN3Q9P232 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 NCK2-206ENST00000522586 490 ntTSL 5 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 KLK3-211ENST00000597483 810 ntTSL 2 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 KRT8P4-201ENST00000509735 1454 ntBASIC16.24■□□□□ 0.19
CNTN3Q9P232 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 RN7SKP230-201ENST00000365642 335 ntBASIC16.24■□□□□ 0.19
CNTN3Q9P232 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 RN7SKP175-201ENST00000408472 289 ntBASIC16.24■□□□□ 0.19
CNTN3Q9P232 AC004945.1-201ENST00000416738 983 ntBASIC16.24■□□□□ 0.19
CNTN3Q9P232 AC079178.1-201ENST00000420915 656 ntBASIC16.24■□□□□ 0.19
CNTN3Q9P232 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 MTX1P1-201ENST00000440904 838 ntBASIC16.24■□□□□ 0.19
CNTN3Q9P232 PFN1P12-201ENST00000455938 534 ntBASIC16.24■□□□□ 0.19
CNTN3Q9P232 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 USB1-203ENST00000539737 1212 ntTSL 2 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 AC011840.2-201ENST00000563063 1520 ntBASIC16.24■□□□□ 0.19
CNTN3Q9P232 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC16.24■□□□□ 0.19
CNTN3Q9P232 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CNTN3Q9P232 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CNTN3Q9P232 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CNTN3Q9P232 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms