Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC17.77■□□□□ 0.44
NUP88Q99567 FAM8A2P-201ENST00000528813 1142 ntBASIC17.77■□□□□ 0.44
NUP88Q99567 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
NUP88Q99567 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC17.77■□□□□ 0.44
NUP88Q99567 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC17.77■□□□□ 0.44
NUP88Q99567 RPS15-205ENST00000586686 562 ntTSL 5 BASIC17.77■□□□□ 0.44
NUP88Q99567 RPS15-208ENST00000591804 711 ntTSL 5 BASIC17.77■□□□□ 0.44
NUP88Q99567 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
NUP88Q99567 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC17.77■□□□□ 0.44
NUP88Q99567 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC17.77■□□□□ 0.44
NUP88Q99567 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC17.77■□□□□ 0.44
NUP88Q99567 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC17.77■□□□□ 0.44
NUP88Q99567 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
NUP88Q99567 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
NUP88Q99567 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
NUP88Q99567 KRT8P14-201ENST00000414254 1442 ntBASIC17.77■□□□□ 0.44
NUP88Q99567 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC17.77■□□□□ 0.44
NUP88Q99567 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NUP88Q99567 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
NUP88Q99567 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
NUP88Q99567 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
NUP88Q99567 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
NUP88Q99567 MST1L-201ENST00000442552 2185 ntBASIC17.77■□□□□ 0.43
NUP88Q99567 AL157414.3-201ENST00000624276 1954 ntBASIC17.77■□□□□ 0.43
NUP88Q99567 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
NUP88Q99567 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
NUP88Q99567 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP88Q99567 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
NUP88Q99567 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.76■□□□□ 0.43
NUP88Q99567 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC17.76■□□□□ 0.43
NUP88Q99567 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP88Q99567 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
NUP88Q99567 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC17.76■□□□□ 0.43
NUP88Q99567 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC17.76■□□□□ 0.43
NUP88Q99567 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NUP88Q99567 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP88Q99567 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP88Q99567 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NUP88Q99567 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
NUP88Q99567 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NUP88Q99567 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP88Q99567 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP88Q99567 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP88Q99567 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
NUP88Q99567 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
NUP88Q99567 GOLGA2P4-201ENST00000441462 777 ntBASIC17.76■□□□□ 0.43
NUP88Q99567 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP88Q99567 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
NUP88Q99567 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NUP88Q99567 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC17.76■□□□□ 0.43
NUP88Q99567 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC17.76■□□□□ 0.43
NUP88Q99567 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP88Q99567 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.76■□□□□ 0.43
NUP88Q99567 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP88Q99567 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC17.76■□□□□ 0.43
NUP88Q99567 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NUP88Q99567 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP88Q99567 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NUP88Q99567 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC17.76■□□□□ 0.43
NUP88Q99567 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP88Q99567 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC17.75■□□□□ 0.43
NUP88Q99567 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.75■□□□□ 0.43
NUP88Q99567 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NUP88Q99567 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
NUP88Q99567 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
NUP88Q99567 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
NUP88Q99567 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
NUP88Q99567 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NUP88Q99567 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NUP88Q99567 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC17.75■□□□□ 0.43
NUP88Q99567 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NUP88Q99567 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NUP88Q99567 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NUP88Q99567 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC17.75■□□□□ 0.43
NUP88Q99567 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NUP88Q99567 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NUP88Q99567 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NUP88Q99567 TPM3P8-201ENST00000330554 643 ntBASIC17.75■□□□□ 0.43
NUP88Q99567 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
NUP88Q99567 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
NUP88Q99567 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
NUP88Q99567 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC17.75■□□□□ 0.43
NUP88Q99567 HLA-K-203ENST00000430151 1046 ntBASIC17.75■□□□□ 0.43
NUP88Q99567 ZNF767P-206ENST00000513792 565 ntBASIC17.75■□□□□ 0.43
NUP88Q99567 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC17.75■□□□□ 0.43
NUP88Q99567 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
NUP88Q99567 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC17.75■□□□□ 0.43
NUP88Q99567 DERL2-202ENST00000570848 657 ntTSL 5 BASIC17.75■□□□□ 0.43
NUP88Q99567 RN7SL48P-201ENST00000579283 293 ntBASIC17.75■□□□□ 0.43
NUP88Q99567 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC17.75■□□□□ 0.43
NUP88Q99567 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC17.75■□□□□ 0.43
NUP88Q99567 AC091271.1-201ENST00000611877 1162 ntBASIC17.75■□□□□ 0.43
NUP88Q99567 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC17.75■□□□□ 0.43
NUP88Q99567 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.75■□□□□ 0.43
NUP88Q99567 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
NUP88Q99567 SSR4P1-203ENST00000599569 2260 ntBASIC17.75■□□□□ 0.43
NUP88Q99567 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NUP88Q99567 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.75■□□□□ 0.43
NUP88Q99567 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
NUP88Q99567 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms