Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 AL691403.2-201ENST00000618460 490 ntBASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 AC006504.5-208ENST00000588784 2401 ntBASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 OS9-204ENST00000389146 2091 ntTSL 2 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 MIR1233-2-201ENST00000408138 82 ntBASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 MIR1233-1-201ENST00000408722 82 ntBASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 GAPDHP40-201ENST00000505218 1006 ntBASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 AC009407.1-201ENST00000568958 598 ntBASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 AL158211.3-201ENST00000607385 239 ntBASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 AL391069.4-201ENST00000609583 481 ntBASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
ATG4AQ8WYN0 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.77■□□□□ 0.11
ATG4AQ8WYN0 AL928921.2-201ENST00000641325 2442 ntBASIC15.77■□□□□ 0.11
ATG4AQ8WYN0 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
ATG4AQ8WYN0 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC15.77■□□□□ 0.11
ATG4AQ8WYN0 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.77■□□□□ 0.11
ATG4AQ8WYN0 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.77■□□□□ 0.11
ATG4AQ8WYN0 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
ATG4AQ8WYN0 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
ATG4AQ8WYN0 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
ATG4AQ8WYN0 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
ATG4AQ8WYN0 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
ATG4AQ8WYN0 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
ATG4AQ8WYN0 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
ATG4AQ8WYN0 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 HSPA7-201ENST00000445535 1927 ntBASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 AL137783.1-201ENST00000623494 1896 ntBASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms