Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 AC006504.5-208ENST00000588784 2401 ntBASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLIP4Q8N3C7 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.33□□□□□ -0.11
CLIP4Q8N3C7 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
CLIP4Q8N3C7 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.11
CLIP4Q8N3C7 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.33□□□□□ -0.11
CLIP4Q8N3C7 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.33□□□□□ -0.11
CLIP4Q8N3C7 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CLIP4Q8N3C7 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.33□□□□□ -0.11
CLIP4Q8N3C7 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC14.33□□□□□ -0.11
CLIP4Q8N3C7 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLIP4Q8N3C7 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.33□□□□□ -0.11
CLIP4Q8N3C7 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
CLIP4Q8N3C7 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLIP4Q8N3C7 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 AJ011931.1-201ENST00000618749 2492 ntBASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 AC125807.1-201ENST00000483097 614 ntBASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 AC025678.2-201ENST00000562061 970 ntBASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 AC073592.8-201ENST00000624126 511 ntBASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 AL109936.8-201ENST00000641772 604 ntBASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP4Q8N3C7 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 AL356585.2-201ENST00000625078 2396 ntBASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms