Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 RPL5P21-201ENST00000404620 815 ntBASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 FAU-202ENST00000434372 533 ntTSL 2 BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 IGHV1-12-201ENST00000518307 205 ntBASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 TREHP1-201ENST00000531328 465 ntBASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 RNF146-211ENST00000609447 607 ntTSL 4 BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 AHCYP4-201ENST00000419201 1315 ntBASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 Z69890.1-201ENST00000382990 339 ntBASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 BUD31-205ENST00000456893 512 ntTSL 5 BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 AC106047.2-201ENST00000511723 743 ntBASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 FOXN3-AS2-201ENST00000554071 1262 ntBASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC9.87□□□□□ -0.83
VPS13DQ5THJ4 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 OR10N1P-201ENST00000392758 869 ntBASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 RN7SL530P-201ENST00000485097 298 ntBASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 AC006529.1-201ENST00000459978 637 ntBASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 AC090502.4-201ENST00000551714 1386 ntBASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 AC126365.1-201ENST00000578585 1514 ntBASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 RNVU1-8-201ENST00000364272 125 ntBASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 STK16-203ENST00000409516 895 ntTSL 2 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 GCSHP3-201ENST00000431120 391 ntBASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
VPS13DQ5THJ4 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms