Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CXCL12P48061 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CXCL12P48061 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.93□□□□□ -0.02
CXCL12P48061 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.93□□□□□ -0.02
CXCL12P48061 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CXCL12P48061 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CXCL12P48061 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CXCL12P48061 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
CXCL12P48061 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
CXCL12P48061 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.92□□□□□ -0.02
CXCL12P48061 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.92□□□□□ -0.02
CXCL12P48061 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.92□□□□□ -0.02
CXCL12P48061 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.92□□□□□ -0.02
CXCL12P48061 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.92□□□□□ -0.02
CXCL12P48061 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 AL583805.1-201ENST00000391389 531 ntBASIC14.92□□□□□ -0.02
CXCL12P48061 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC14.92□□□□□ -0.02
CXCL12P48061 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC14.92□□□□□ -0.02
CXCL12P48061 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC14.92□□□□□ -0.02
CXCL12P48061 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 AP000358.1-201ENST00000456260 156 ntBASIC14.92□□□□□ -0.02
CXCL12P48061 IGHV3-37-201ENST00000518544 340 ntBASIC14.92□□□□□ -0.02
CXCL12P48061 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
CXCL12P48061 RBM8B-201ENST00000555532 525 ntBASIC14.92□□□□□ -0.02
CXCL12P48061 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC14.92□□□□□ -0.02
CXCL12P48061 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
CXCL12P48061 AC012508.2-201ENST00000567613 1472 ntBASIC14.92□□□□□ -0.02
CXCL12P48061 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC14.92□□□□□ -0.02
CXCL12P48061 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC14.92□□□□□ -0.02
CXCL12P48061 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.92□□□□□ -0.02
CXCL12P48061 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CXCL12P48061 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC14.92□□□□□ -0.02
CXCL12P48061 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
CXCL12P48061 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC14.92□□□□□ -0.02
CXCL12P48061 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.91□□□□□ -0.02
CXCL12P48061 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
CXCL12P48061 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
CXCL12P48061 AC144522.1-201ENST00000625111 1658 ntBASIC14.91□□□□□ -0.02
CXCL12P48061 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.91□□□□□ -0.02
CXCL12P48061 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.91□□□□□ -0.02
CXCL12P48061 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
CXCL12P48061 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 Z69890.1-201ENST00000382990 339 ntBASIC14.91□□□□□ -0.02
CXCL12P48061 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 AC012362.1-201ENST00000434906 739 ntBASIC14.91□□□□□ -0.02
CXCL12P48061 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC14.91□□□□□ -0.02
CXCL12P48061 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC14.91□□□□□ -0.02
CXCL12P48061 AL035414.1-201ENST00000451327 857 ntBASIC14.91□□□□□ -0.02
CXCL12P48061 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 KRT18P66-201ENST00000452970 1269 ntBASIC14.91□□□□□ -0.02
CXCL12P48061 CHCHD2P9-201ENST00000461726 456 ntBASIC14.91□□□□□ -0.02
CXCL12P48061 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 AL157792.1-201ENST00000488281 530 ntBASIC14.91□□□□□ -0.02
CXCL12P48061 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC14.91□□□□□ -0.02
CXCL12P48061 AC093752.3-201ENST00000567343 901 ntBASIC14.91□□□□□ -0.02
CXCL12P48061 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC14.91□□□□□ -0.02
CXCL12P48061 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC14.91□□□□□ -0.02
CXCL12P48061 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
CXCL12P48061 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC14.91□□□□□ -0.02
CXCL12P48061 AC087392.5-201ENST00000612517 489 ntBASIC14.91□□□□□ -0.02
CXCL12P48061 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
CXCL12P48061 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 CICP11-201ENST00000434745 2827 ntBASIC14.91□□□□□ -0.02
CXCL12P48061 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
CXCL12P48061 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CXCL12P48061 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 157.8 ms