Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL18A1P39060 RN7SKP109-201ENST00000410592 316 ntBASIC19.38■□□□□ 0.69
COL18A1P39060 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC19.38■□□□□ 0.69
COL18A1P39060 ALG1L13P-202ENST00000519320 584 ntBASIC19.38■□□□□ 0.69
COL18A1P39060 LINC00431-202ENST00000636375 159 ntBASIC19.38■□□□□ 0.69
COL18A1P39060 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC19.38■□□□□ 0.69
COL18A1P39060 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
COL18A1P39060 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL18A1P39060 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC19.38■□□□□ 0.69
COL18A1P39060 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL18A1P39060 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL18A1P39060 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL18A1P39060 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL18A1P39060 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC19.38■□□□□ 0.69
COL18A1P39060 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.38■□□□□ 0.69
COL18A1P39060 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
COL18A1P39060 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
COL18A1P39060 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL18A1P39060 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL18A1P39060 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL18A1P39060 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC19.37■□□□□ 0.69
COL18A1P39060 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL18A1P39060 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC19.37■□□□□ 0.69
COL18A1P39060 AL118516.1-201ENST00000564152 670 ntBASIC19.37■□□□□ 0.69
COL18A1P39060 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC19.37■□□□□ 0.69
COL18A1P39060 FO393412.1-201ENST00000619841 382 ntBASIC19.37■□□□□ 0.69
COL18A1P39060 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC19.37■□□□□ 0.69
COL18A1P39060 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL18A1P39060 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL18A1P39060 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL18A1P39060 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC19.37■□□□□ 0.69
COL18A1P39060 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC19.37■□□□□ 0.69
COL18A1P39060 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL18A1P39060 API5-208ENST00000531273 1868 ntTSL 2 BASIC19.37■□□□□ 0.69
COL18A1P39060 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL18A1P39060 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL18A1P39060 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL18A1P39060 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL18A1P39060 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
COL18A1P39060 Z69890.1-201ENST00000382990 339 ntBASIC19.37■□□□□ 0.69
COL18A1P39060 CELP-201ENST00000411440 1249 ntTSL 5 BASIC19.37■□□□□ 0.69
COL18A1P39060 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC19.37■□□□□ 0.69
COL18A1P39060 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC19.37■□□□□ 0.69
COL18A1P39060 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC19.37■□□□□ 0.69
COL18A1P39060 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL18A1P39060 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC19.37■□□□□ 0.69
COL18A1P39060 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC19.37■□□□□ 0.69
COL18A1P39060 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL18A1P39060 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL18A1P39060 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
COL18A1P39060 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL18A1P39060 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL18A1P39060 AL136172.1-201ENST00000598590 1394 ntBASIC19.36■□□□□ 0.69
COL18A1P39060 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
COL18A1P39060 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL18A1P39060 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC19.36■□□□□ 0.69
COL18A1P39060 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL18A1P39060 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL18A1P39060 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC19.36■□□□□ 0.69
COL18A1P39060 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL18A1P39060 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
COL18A1P39060 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
COL18A1P39060 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL18A1P39060 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL18A1P39060 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC19.36■□□□□ 0.69
COL18A1P39060 RGS5-216ENST00000449680 788 ntTSL 3 BASIC19.36■□□□□ 0.69
COL18A1P39060 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC19.36■□□□□ 0.69
COL18A1P39060 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC19.36■□□□□ 0.69
COL18A1P39060 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
COL18A1P39060 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
COL18A1P39060 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL18A1P39060 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL18A1P39060 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
COL18A1P39060 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC19.36■□□□□ 0.69
COL18A1P39060 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC19.36■□□□□ 0.69
COL18A1P39060 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL18A1P39060 AC136621.1-201ENST00000624017 2304 ntBASIC19.36■□□□□ 0.69
COL18A1P39060 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL18A1P39060 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.36■□□□□ 0.69
COL18A1P39060 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC19.35■□□□□ 0.69
COL18A1P39060 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC19.35■□□□□ 0.69
COL18A1P39060 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC19.35■□□□□ 0.69
COL18A1P39060 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC19.35■□□□□ 0.69
COL18A1P39060 AC068867.1-201ENST00000559855 150 ntBASIC19.35■□□□□ 0.69
COL18A1P39060 DRG2-220ENST00000583355 891 ntTSL 3 BASIC19.35■□□□□ 0.69
COL18A1P39060 AC090386.2-201ENST00000623010 1039 ntBASIC19.35■□□□□ 0.69
COL18A1P39060 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC19.35■□□□□ 0.69
COL18A1P39060 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
COL18A1P39060 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL18A1P39060 BRD7P5-201ENST00000299197 1822 ntBASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms