Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BRCA1P38398 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
BRCA1P38398 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
BRCA1P38398 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
BRCA1P38398 WASH3P-207ENST00000560956 1394 ntBASIC17.82■□□□□ 0.44
BRCA1P38398 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
BRCA1P38398 SUPT20HL2-201ENST00000486479 2409 ntBASIC17.82■□□□□ 0.44
BRCA1P38398 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
BRCA1P38398 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.82■□□□□ 0.44
BRCA1P38398 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BRCA1P38398 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BRCA1P38398 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
BRCA1P38398 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BRCA1P38398 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
BRCA1P38398 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC17.82■□□□□ 0.44
BRCA1P38398 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC17.82■□□□□ 0.44
BRCA1P38398 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
BRCA1P38398 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC17.82■□□□□ 0.44
BRCA1P38398 ALG1L7P-201ENST00000502317 768 ntBASIC17.82■□□□□ 0.44
BRCA1P38398 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC17.82■□□□□ 0.44
BRCA1P38398 FOXN3-AS2-201ENST00000554071 1262 ntBASIC17.82■□□□□ 0.44
BRCA1P38398 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC17.82■□□□□ 0.44
BRCA1P38398 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
BRCA1P38398 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
BRCA1P38398 AC009093.10-201ENST00000641956 1442 ntBASIC17.81■□□□□ 0.44
BRCA1P38398 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
BRCA1P38398 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
BRCA1P38398 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC17.81■□□□□ 0.44
BRCA1P38398 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
BRCA1P38398 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC17.81■□□□□ 0.44
BRCA1P38398 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
BRCA1P38398 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
BRCA1P38398 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
BRCA1P38398 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC17.81■□□□□ 0.44
BRCA1P38398 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
BRCA1P38398 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC17.81■□□□□ 0.44
BRCA1P38398 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
BRCA1P38398 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC17.81■□□□□ 0.44
BRCA1P38398 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC17.81■□□□□ 0.44
BRCA1P38398 RPS18P9-201ENST00000482817 460 ntBASIC17.81■□□□□ 0.44
BRCA1P38398 AC018846.1-201ENST00000568231 183 ntBASIC17.81■□□□□ 0.44
BRCA1P38398 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
BRCA1P38398 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
BRCA1P38398 AGGF1P1-201ENST00000509500 2073 ntBASIC17.81■□□□□ 0.44
BRCA1P38398 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.81■□□□□ 0.44
BRCA1P38398 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
BRCA1P38398 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
BRCA1P38398 AL662844.4-201ENST00000606367 2838 ntBASIC17.81■□□□□ 0.44
BRCA1P38398 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.81■□□□□ 0.44
BRCA1P38398 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC17.81■□□□□ 0.44
BRCA1P38398 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
BRCA1P38398 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
BRCA1P38398 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
BRCA1P38398 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
BRCA1P38398 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC17.8■□□□□ 0.44
BRCA1P38398 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC17.8■□□□□ 0.44
BRCA1P38398 SERBP1P2-201ENST00000436888 1164 ntBASIC17.8■□□□□ 0.44
BRCA1P38398 AC098934.1-203ENST00000442868 1262 ntBASIC17.8■□□□□ 0.44
BRCA1P38398 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC17.8■□□□□ 0.44
BRCA1P38398 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC17.8■□□□□ 0.44
BRCA1P38398 KLF17P1-201ENST00000547105 1126 ntBASIC17.8■□□□□ 0.44
BRCA1P38398 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
BRCA1P38398 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC17.8■□□□□ 0.44
BRCA1P38398 AC233280.19-201ENST00000633223 136 ntBASIC17.8■□□□□ 0.44
BRCA1P38398 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
BRCA1P38398 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC17.8■□□□□ 0.44
BRCA1P38398 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
BRCA1P38398 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 AC090616.6-203ENST00000579186 1945 ntBASIC17.8■□□□□ 0.44
BRCA1P38398 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC17.8■□□□□ 0.44
BRCA1P38398 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 SNORA57-201ENST00000383870 149 ntBASIC17.8■□□□□ 0.44
BRCA1P38398 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC17.8■□□□□ 0.44
BRCA1P38398 AL512599.1-201ENST00000430724 685 ntBASIC17.8■□□□□ 0.44
BRCA1P38398 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
BRCA1P38398 PMEL-214ENST00000550447 901 ntTSL 3 BASIC17.8■□□□□ 0.44
BRCA1P38398 AL590235.1-201ENST00000564650 861 ntBASIC17.8■□□□□ 0.44
BRCA1P38398 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC17.79■□□□□ 0.44
BRCA1P38398 AC012313.1-201ENST00000593393 3059 ntBASIC17.79■□□□□ 0.44
BRCA1P38398 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BRCA1P38398 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
BRCA1P38398 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
BRCA1P38398 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms