Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 IGHVIII-5-2-201ENST00000522505 261 ntBASIC17.39■□□□□ 0.37
SCN4AP35499 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC17.39■□□□□ 0.37
SCN4AP35499 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
SCN4AP35499 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC17.39■□□□□ 0.37
SCN4AP35499 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC17.39■□□□□ 0.37
SCN4AP35499 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SCN4AP35499 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SCN4AP35499 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SCN4AP35499 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC17.39■□□□□ 0.37
SCN4AP35499 STK33-217ENST00000534493 1895 ntTSL 2 BASIC17.39■□□□□ 0.37
SCN4AP35499 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SCN4AP35499 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC17.39■□□□□ 0.37
SCN4AP35499 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC17.39■□□□□ 0.37
SCN4AP35499 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC17.39■□□□□ 0.37
SCN4AP35499 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SCN4AP35499 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SCN4AP35499 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC17.38■□□□□ 0.37
SCN4AP35499 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 R3HDM2P2-201ENST00000401880 2116 ntBASIC17.38■□□□□ 0.37
SCN4AP35499 AC006372.4-201ENST00000624122 1543 ntBASIC17.38■□□□□ 0.37
SCN4AP35499 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC17.38■□□□□ 0.37
SCN4AP35499 OR8T1P-201ENST00000421347 918 ntBASIC17.38■□□□□ 0.37
SCN4AP35499 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC17.38■□□□□ 0.37
SCN4AP35499 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC17.38■□□□□ 0.37
SCN4AP35499 RPS23-207ENST00000511844 530 ntTSL 2 BASIC17.38■□□□□ 0.37
SCN4AP35499 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC17.38■□□□□ 0.37
SCN4AP35499 COX5A-205ENST00000568517 582 ntTSL 3 BASIC17.38■□□□□ 0.37
SCN4AP35499 DRG2-220ENST00000583355 891 ntTSL 3 BASIC17.38■□□□□ 0.37
SCN4AP35499 APOC1-209ENST00000592885 562 ntTSL 3 BASIC17.38■□□□□ 0.37
SCN4AP35499 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SCN4AP35499 AC011462.4-201ENST00000616866 449 ntBASIC17.38■□□□□ 0.37
SCN4AP35499 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.38■□□□□ 0.37
SCN4AP35499 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 FTX-216ENST00000638985 1367 ntTSL 5 BASIC17.38■□□□□ 0.37
SCN4AP35499 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC17.38■□□□□ 0.37
SCN4AP35499 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC17.38■□□□□ 0.37
SCN4AP35499 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
SCN4AP35499 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SCN4AP35499 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.38■□□□□ 0.37
SCN4AP35499 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SCN4AP35499 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC17.37■□□□□ 0.37
SCN4AP35499 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC17.37■□□□□ 0.37
SCN4AP35499 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC17.37■□□□□ 0.37
SCN4AP35499 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SCN4AP35499 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SCN4AP35499 AC098934.1-203ENST00000442868 1262 ntBASIC17.37■□□□□ 0.37
SCN4AP35499 RNA5SP406-201ENST00000516106 112 ntBASIC17.37■□□□□ 0.37
SCN4AP35499 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC17.37■□□□□ 0.37
SCN4AP35499 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC17.37■□□□□ 0.37
SCN4AP35499 AC124068.2-201ENST00000569473 1109 ntBASIC17.37■□□□□ 0.37
SCN4AP35499 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC17.37■□□□□ 0.37
SCN4AP35499 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC17.37■□□□□ 0.37
SCN4AP35499 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC17.37■□□□□ 0.37
SCN4AP35499 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SCN4AP35499 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SCN4AP35499 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.37■□□□□ 0.37
SCN4AP35499 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SCN4AP35499 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SCN4AP35499 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SCN4AP35499 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SCN4AP35499 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SCN4AP35499 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SCN4AP35499 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
SCN4AP35499 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SCN4AP35499 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SCN4AP35499 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.37■□□□□ 0.37
SCN4AP35499 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
SCN4AP35499 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SCN4AP35499 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.37■□□□□ 0.37
SCN4AP35499 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SCN4AP35499 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SCN4AP35499 CTSL-202ENST00000342020 933 ntTSL 2 BASIC17.37■□□□□ 0.37
SCN4AP35499 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SCN4AP35499 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC17.37■□□□□ 0.37
SCN4AP35499 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC17.37■□□□□ 0.37
SCN4AP35499 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC17.37■□□□□ 0.37
SCN4AP35499 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC17.37■□□□□ 0.37
SCN4AP35499 AC023906.1-201ENST00000486386 453 ntBASIC17.37■□□□□ 0.37
SCN4AP35499 F11R-204ENST00000537746 1245 ntTSL 2 BASIC17.37■□□□□ 0.37
SCN4AP35499 MBP-238ENST00000580402 915 ntTSL 5 BASIC17.37■□□□□ 0.37
SCN4AP35499 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms