Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC14.68□□□□□ -0.06
HOXC4P09017 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.68□□□□□ -0.06
HOXC4P09017 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 AC006486.2-201ENST00000624246 2199 ntBASIC14.68□□□□□ -0.06
HOXC4P09017 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.68□□□□□ -0.06
HOXC4P09017 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.68□□□□□ -0.06
HOXC4P09017 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.68□□□□□ -0.06
HOXC4P09017 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.68□□□□□ -0.06
HOXC4P09017 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.68□□□□□ -0.06
HOXC4P09017 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.68□□□□□ -0.06
HOXC4P09017 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.68□□□□□ -0.06
HOXC4P09017 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
HOXC4P09017 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
HOXC4P09017 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HOXC4P09017 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXC4P09017 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HOXC4P09017 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC14.67□□□□□ -0.06
HOXC4P09017 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
HOXC4P09017 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
HOXC4P09017 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
HOXC4P09017 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXC4P09017 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXC4P09017 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXC4P09017 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXC4P09017 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXC4P09017 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
HOXC4P09017 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXC4P09017 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
HOXC4P09017 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC14.67□□□□□ -0.06
HOXC4P09017 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
HOXC4P09017 CALR4P-201ENST00000431943 946 ntBASIC14.67□□□□□ -0.06
HOXC4P09017 AL035414.1-201ENST00000451327 857 ntBASIC14.67□□□□□ -0.06
HOXC4P09017 AC021723.1-201ENST00000486306 515 ntBASIC14.67□□□□□ -0.06
HOXC4P09017 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC14.67□□□□□ -0.06
HOXC4P09017 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
HOXC4P09017 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.67□□□□□ -0.06
HOXC4P09017 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC14.67□□□□□ -0.06
HOXC4P09017 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC14.67□□□□□ -0.06
HOXC4P09017 AC005730.2-201ENST00000564549 1184 ntBASIC14.67□□□□□ -0.06
HOXC4P09017 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.67□□□□□ -0.06
HOXC4P09017 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC14.67□□□□□ -0.06
HOXC4P09017 AC132192.2-201ENST00000596206 1147 ntBASIC14.67□□□□□ -0.06
HOXC4P09017 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.67□□□□□ -0.06
HOXC4P09017 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HOXC4P09017 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HOXC4P09017 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXC4P09017 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HOXC4P09017 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.67□□□□□ -0.06
HOXC4P09017 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC14.67□□□□□ -0.06
HOXC4P09017 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXC4P09017 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.67□□□□□ -0.06
HOXC4P09017 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HOXC4P09017 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
HOXC4P09017 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXC4P09017 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXC4P09017 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
HOXC4P09017 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.66□□□□□ -0.06
HOXC4P09017 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXC4P09017 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXC4P09017 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXC4P09017 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.66□□□□□ -0.06
HOXC4P09017 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXC4P09017 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXC4P09017 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HOXC4P09017 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.66□□□□□ -0.06
HOXC4P09017 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.66□□□□□ -0.06
HOXC4P09017 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXC4P09017 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
HOXC4P09017 DPM3-202ENST00000368399 517 ntBASIC14.66□□□□□ -0.06
HOXC4P09017 AL008707.1-201ENST00000422498 534 ntBASIC14.66□□□□□ -0.06
HOXC4P09017 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC14.66□□□□□ -0.06
HOXC4P09017 PUDPP3-201ENST00000445368 636 ntBASIC14.66□□□□□ -0.06
HOXC4P09017 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC14.66□□□□□ -0.06
HOXC4P09017 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
HOXC4P09017 AC100827.2-201ENST00000563214 1194 ntBASIC14.66□□□□□ -0.06
HOXC4P09017 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HOXC4P09017 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HOXC4P09017 AP000346.4-201ENST00000614827 381 ntBASIC14.66□□□□□ -0.06
HOXC4P09017 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC14.66□□□□□ -0.06
HOXC4P09017 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
HOXC4P09017 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
HOXC4P09017 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXC4P09017 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.66□□□□□ -0.06
HOXC4P09017 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXC4P09017 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HOXC4P09017 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HOXC4P09017 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXC4P09017 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HOXC4P09017 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
HOXC4P09017 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXC4P09017 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXC4P09017 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HOXC4P09017 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms