Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC19.13■□□□□ 0.65
NPHP1O15259 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC19.13■□□□□ 0.65
NPHP1O15259 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC19.13■□□□□ 0.65
NPHP1O15259 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
NPHP1O15259 AL353726.2-201ENST00000623259 884 ntBASIC19.13■□□□□ 0.65
NPHP1O15259 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
NPHP1O15259 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
NPHP1O15259 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
NPHP1O15259 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
NPHP1O15259 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
NPHP1O15259 KRT8P19-201ENST00000551916 1455 ntBASIC19.13■□□□□ 0.65
NPHP1O15259 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC19.13■□□□□ 0.65
NPHP1O15259 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NPHP1O15259 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NPHP1O15259 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NPHP1O15259 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NPHP1O15259 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
NPHP1O15259 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC19.13■□□□□ 0.65
NPHP1O15259 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NPHP1O15259 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
NPHP1O15259 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NPHP1O15259 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
NPHP1O15259 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
NPHP1O15259 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC19.12■□□□□ 0.65
NPHP1O15259 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NPHP1O15259 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
NPHP1O15259 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
NPHP1O15259 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
NPHP1O15259 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NPHP1O15259 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.12■□□□□ 0.65
NPHP1O15259 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NPHP1O15259 AC069224.1-201ENST00000566372 1715 ntBASIC19.12■□□□□ 0.65
NPHP1O15259 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC19.12■□□□□ 0.65
NPHP1O15259 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NPHP1O15259 CRCP-204ENST00000398684 492 ntTSL 2 BASIC19.12■□□□□ 0.65
NPHP1O15259 AL008707.1-201ENST00000422498 534 ntBASIC19.12■□□□□ 0.65
NPHP1O15259 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
NPHP1O15259 EIF3FP3-201ENST00000434851 1086 ntBASIC19.12■□□□□ 0.65
NPHP1O15259 AC011742.3-201ENST00000439053 820 ntBASIC19.12■□□□□ 0.65
NPHP1O15259 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
NPHP1O15259 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC19.12■□□□□ 0.65
NPHP1O15259 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC19.12■□□□□ 0.65
NPHP1O15259 CHMP4BP1-201ENST00000556017 588 ntBASIC19.12■□□□□ 0.65
NPHP1O15259 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
NPHP1O15259 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
NPHP1O15259 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
NPHP1O15259 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NPHP1O15259 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
NPHP1O15259 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC19.12■□□□□ 0.65
NPHP1O15259 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
NPHP1O15259 AL513477.1-201ENST00000602865 2407 ntBASIC19.12■□□□□ 0.65
NPHP1O15259 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NPHP1O15259 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
NPHP1O15259 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NPHP1O15259 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.12■□□□□ 0.65
NPHP1O15259 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC19.12■□□□□ 0.65
NPHP1O15259 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC19.12■□□□□ 0.65
NPHP1O15259 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NPHP1O15259 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
NPHP1O15259 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
NPHP1O15259 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NPHP1O15259 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
NPHP1O15259 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
NPHP1O15259 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
NPHP1O15259 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NPHP1O15259 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NPHP1O15259 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC19.11■□□□□ 0.65
NPHP1O15259 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
NPHP1O15259 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NPHP1O15259 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NPHP1O15259 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
NPHP1O15259 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NPHP1O15259 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NPHP1O15259 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC19.11■□□□□ 0.65
NPHP1O15259 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC19.11■□□□□ 0.65
NPHP1O15259 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
NPHP1O15259 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC19.11■□□□□ 0.65
NPHP1O15259 RGS5-214ENST00000429865 754 ntTSL 3 BASIC19.11■□□□□ 0.65
NPHP1O15259 PTPA-217ENST00000434095 870 ntTSL 2 BASIC19.11■□□□□ 0.65
NPHP1O15259 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC19.11■□□□□ 0.65
NPHP1O15259 FGFR3P5-201ENST00000564496 886 ntBASIC19.11■□□□□ 0.65
NPHP1O15259 SNX1-214ENST00000625244 324 ntTSL 5 BASIC19.11■□□□□ 0.65
NPHP1O15259 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
NPHP1O15259 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NPHP1O15259 TKT-202ENST00000423516 2075 ntTSL 2 BASIC19.11■□□□□ 0.65
NPHP1O15259 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC19.11■□□□□ 0.65
NPHP1O15259 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC19.11■□□□□ 0.65
NPHP1O15259 AC055811.4-201ENST00000624039 1754 ntBASIC19.11■□□□□ 0.65
NPHP1O15259 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC19.11■□□□□ 0.65
NPHP1O15259 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
NPHP1O15259 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
NPHP1O15259 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC19.1■□□□□ 0.65
NPHP1O15259 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
NPHP1O15259 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
NPHP1O15259 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NPHP1O15259 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
NPHP1O15259 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
NPHP1O15259 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NPHP1O15259 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC19.1■□□□□ 0.65
NPHP1O15259 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms