Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 AP005019.2-201ENST00000615104 511 ntBASIC16.25■□□□□ 0.19
SIX2Q9NPC8 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 RPSAP52-203ENST00000622976 1023 ntBASIC16.25■□□□□ 0.19
SIX2Q9NPC8 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 ACTBP8-201ENST00000403258 1108 ntBASIC16.24■□□□□ 0.19
SIX2Q9NPC8 GIMAP3P-201ENST00000495150 836 ntBASIC16.24■□□□□ 0.19
SIX2Q9NPC8 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 AC190387.1-201ENST00000551683 408 ntBASIC16.24■□□□□ 0.19
SIX2Q9NPC8 AC138761.1-201ENST00000584393 385 ntBASIC16.24■□□□□ 0.19
SIX2Q9NPC8 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC16.24■□□□□ 0.19
SIX2Q9NPC8 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 MSTO2P-201ENST00000314835 1709 ntBASIC16.23■□□□□ 0.19
SIX2Q9NPC8 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 TPT1P11-201ENST00000458482 498 ntBASIC16.23■□□□□ 0.19
SIX2Q9NPC8 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SIX2Q9NPC8 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX2Q9NPC8 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX2Q9NPC8 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX2Q9NPC8 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX2Q9NPC8 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX2Q9NPC8 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms