Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 TNN-203ENST00000622870 3719 ntTSL 5 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 AC007787.1-201ENST00000588095 1583 ntBASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 LINC01230-201ENST00000625222 3017 ntBASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 AL360270.3-201ENST00000609118 1348 ntBASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 GSAP-205ENST00000430584 600 ntTSL 5 BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 AC023310.3-201ENST00000557027 670 ntBASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 AC100756.1-201ENST00000562736 682 ntBASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 AC138749.3-201ENST00000567691 622 ntBASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 COX11-202ENST00000571584 1108 ntTSL 2 BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 AC027307.3-201ENST00000594262 1100 ntBASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 CECR7-204ENST00000609932 568 ntTSL 2 BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 AC116165.1-201ENST00000611806 668 ntBASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 GOLGA8DP-202ENST00000341390 2184 ntBASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
UPF3BQ9BZI7 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms