Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 E2F3P2-201ENST00000447755 1422 ntBASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 AC073347.1-201ENST00000421633 2643 ntBASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 AC003102.2-201ENST00000589195 1469 ntBASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 ATP6V0CP2-201ENST00000469409 207 ntBASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 AL162426.1-201ENST00000624141 743 ntBASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 CICP6-201ENST00000457191 2729 ntBASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PAAF1Q9BRP4 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 KRT8P29-201ENST00000420409 1371 ntBASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 AC013268.4-201ENST00000637413 2228 ntBASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 AC021723.1-201ENST00000486306 515 ntBASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 AC009955.4-201ENST00000597192 544 ntBASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 AC068587.10-201ENST00000641210 219 ntBASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PAAF1Q9BRP4 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms