Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 RAB43P1-201ENST00000561790 589 ntBASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 AC106886.1-201ENST00000568660 600 ntBASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 KRT8P35-201ENST00000483942 1338 ntBASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 GK-202ENST00000378941 458 ntTSL 3 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 AC112492.5-201ENST00000421897 457 ntBASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 PRSS30P-206ENST00000641773 873 ntBASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 LINC02228-204ENST00000642115 2962 ntBASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 LRRC59-203ENST00000576448 1531 ntBASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.36□□□□□ -0.11
PTCHD1Q96NR3 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms