Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTR9Q6PD62 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
CTR9Q6PD62 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTR9Q6PD62 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTR9Q6PD62 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC18.04■□□□□ 0.48
CTR9Q6PD62 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTR9Q6PD62 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTR9Q6PD62 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC18.04■□□□□ 0.48
CTR9Q6PD62 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTR9Q6PD62 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTR9Q6PD62 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CTR9Q6PD62 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTR9Q6PD62 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CTR9Q6PD62 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
CTR9Q6PD62 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTR9Q6PD62 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTR9Q6PD62 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC18.03■□□□□ 0.48
CTR9Q6PD62 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTR9Q6PD62 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC18.03■□□□□ 0.48
CTR9Q6PD62 AHCYP2-201ENST00000430630 1300 ntBASIC18.03■□□□□ 0.48
CTR9Q6PD62 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CTR9Q6PD62 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CTR9Q6PD62 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTR9Q6PD62 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTR9Q6PD62 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CTR9Q6PD62 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTR9Q6PD62 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTR9Q6PD62 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTR9Q6PD62 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
CTR9Q6PD62 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CTR9Q6PD62 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTR9Q6PD62 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC18.03■□□□□ 0.48
CTR9Q6PD62 AC245100.3-201ENST00000441281 285 ntBASIC18.03■□□□□ 0.48
CTR9Q6PD62 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC18.03■□□□□ 0.48
CTR9Q6PD62 PFN2-215ENST00000497148 743 ntTSL 4 BASIC18.03■□□□□ 0.48
CTR9Q6PD62 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC18.03■□□□□ 0.48
CTR9Q6PD62 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC18.03■□□□□ 0.48
CTR9Q6PD62 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC18.03■□□□□ 0.48
CTR9Q6PD62 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC18.03■□□□□ 0.48
CTR9Q6PD62 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTR9Q6PD62 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTR9Q6PD62 NORAD-201ENST00000565493 5339 ntBASIC18.03■□□□□ 0.48
CTR9Q6PD62 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTR9Q6PD62 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CTR9Q6PD62 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTR9Q6PD62 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CTR9Q6PD62 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC18.03■□□□□ 0.48
CTR9Q6PD62 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTR9Q6PD62 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CTR9Q6PD62 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
CTR9Q6PD62 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CTR9Q6PD62 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CTR9Q6PD62 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTR9Q6PD62 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTR9Q6PD62 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTR9Q6PD62 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC18.02■□□□□ 0.48
CTR9Q6PD62 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CTR9Q6PD62 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTR9Q6PD62 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CTR9Q6PD62 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CTR9Q6PD62 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC18.02■□□□□ 0.48
CTR9Q6PD62 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
CTR9Q6PD62 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTR9Q6PD62 FAM45BP-202ENST00000592932 1624 ntBASIC18.02■□□□□ 0.48
CTR9Q6PD62 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC18.02■□□□□ 0.48
CTR9Q6PD62 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC18.02■□□□□ 0.48
CTR9Q6PD62 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTR9Q6PD62 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTR9Q6PD62 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTR9Q6PD62 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTR9Q6PD62 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CTR9Q6PD62 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC18.02■□□□□ 0.48
CTR9Q6PD62 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC18.02■□□□□ 0.48
CTR9Q6PD62 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC18.02■□□□□ 0.48
CTR9Q6PD62 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC18.02■□□□□ 0.48
CTR9Q6PD62 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CTR9Q6PD62 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC18.02■□□□□ 0.48
CTR9Q6PD62 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CTR9Q6PD62 DUX4L45-201ENST00000566406 1057 ntBASIC18.02■□□□□ 0.48
CTR9Q6PD62 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC18.02■□□□□ 0.48
CTR9Q6PD62 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTR9Q6PD62 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC18.02■□□□□ 0.48
CTR9Q6PD62 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC18.02■□□□□ 0.47
CTR9Q6PD62 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC18.02■□□□□ 0.47
CTR9Q6PD62 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTR9Q6PD62 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTR9Q6PD62 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC18.02■□□□□ 0.47
CTR9Q6PD62 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CTR9Q6PD62 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC18.02■□□□□ 0.47
CTR9Q6PD62 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC18.02■□□□□ 0.47
CTR9Q6PD62 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC18.02■□□□□ 0.47
CTR9Q6PD62 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms