Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
KRT39Q6A163 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
KRT39Q6A163 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC16.41■□□□□ 0.22
KRT39Q6A163 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC16.41■□□□□ 0.22
KRT39Q6A163 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
KRT39Q6A163 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
KRT39Q6A163 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
KRT39Q6A163 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
KRT39Q6A163 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
KRT39Q6A163 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
KRT39Q6A163 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
KRT39Q6A163 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
KRT39Q6A163 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
KRT39Q6A163 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
KRT39Q6A163 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.41■□□□□ 0.22
KRT39Q6A163 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
KRT39Q6A163 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
KRT39Q6A163 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
KRT39Q6A163 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
KRT39Q6A163 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
KRT39Q6A163 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.41■□□□□ 0.22
KRT39Q6A163 AL603764.1-201ENST00000636452 321 ntBASIC16.41■□□□□ 0.22
KRT39Q6A163 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.41■□□□□ 0.22
KRT39Q6A163 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC16.41■□□□□ 0.22
KRT39Q6A163 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
KRT39Q6A163 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC16.41■□□□□ 0.22
KRT39Q6A163 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
KRT39Q6A163 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC16.41■□□□□ 0.22
KRT39Q6A163 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
KRT39Q6A163 AC099063.4-201ENST00000641099 1602 ntBASIC16.41■□□□□ 0.22
KRT39Q6A163 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
KRT39Q6A163 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
KRT39Q6A163 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.41■□□□□ 0.22
KRT39Q6A163 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
KRT39Q6A163 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
KRT39Q6A163 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC16.41■□□□□ 0.22
KRT39Q6A163 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
KRT39Q6A163 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
KRT39Q6A163 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
KRT39Q6A163 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
KRT39Q6A163 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC16.4■□□□□ 0.22
KRT39Q6A163 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
KRT39Q6A163 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.4■□□□□ 0.22
KRT39Q6A163 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.4■□□□□ 0.22
KRT39Q6A163 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
KRT39Q6A163 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
KRT39Q6A163 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 CALY-203ENST00000368558 825 ntTSL 5 BASIC16.4■□□□□ 0.22
KRT39Q6A163 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
KRT39Q6A163 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
KRT39Q6A163 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
KRT39Q6A163 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.4■□□□□ 0.22
KRT39Q6A163 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
KRT39Q6A163 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
KRT39Q6A163 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
KRT39Q6A163 ACTG1P3-201ENST00000431775 1114 ntBASIC16.4■□□□□ 0.22
KRT39Q6A163 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.4■□□□□ 0.22
KRT39Q6A163 GIMAP3P-201ENST00000495150 836 ntBASIC16.4■□□□□ 0.22
KRT39Q6A163 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.4■□□□□ 0.22
KRT39Q6A163 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC16.4■□□□□ 0.22
KRT39Q6A163 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.4■□□□□ 0.22
KRT39Q6A163 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
KRT39Q6A163 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
KRT39Q6A163 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
KRT39Q6A163 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC16.4■□□□□ 0.22
KRT39Q6A163 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.4■□□□□ 0.22
KRT39Q6A163 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
KRT39Q6A163 CICP14-201ENST00000629111 2732 ntBASIC16.4■□□□□ 0.22
KRT39Q6A163 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 AL513477.1-201ENST00000602865 2407 ntBASIC16.4■□□□□ 0.22
KRT39Q6A163 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.4■□□□□ 0.22
KRT39Q6A163 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 KRT8P35-201ENST00000483942 1338 ntBASIC16.4■□□□□ 0.22
KRT39Q6A163 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC16.4■□□□□ 0.22
KRT39Q6A163 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC16.4■□□□□ 0.22
KRT39Q6A163 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
KRT39Q6A163 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
KRT39Q6A163 LRRC59-203ENST00000576448 1531 ntBASIC16.4■□□□□ 0.22
KRT39Q6A163 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.4■□□□□ 0.22
KRT39Q6A163 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms