Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 RN7SL736P-201ENST00000613111 269 ntBASIC14.68□□□□□ -0.06
COL28A1Q2UY09 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 UFM1-202ENST00000379649 846 ntTSL 4 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 SDHD-202ENST00000525291 790 ntTSL 3 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 PGAM1P5-201ENST00000548011 764 ntBASIC14.67□□□□□ -0.06
COL28A1Q2UY09 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 AP000346.4-201ENST00000614827 381 ntBASIC14.67□□□□□ -0.06
COL28A1Q2UY09 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL28A1Q2UY09 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms