Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
NEK3P51956 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
NEK3P51956 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.73■□□□□ 0.11
NEK3P51956 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 INTS4P2-202ENST00000614726 2019 ntBASIC15.73■□□□□ 0.11
NEK3P51956 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.73■□□□□ 0.11
NEK3P51956 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
NEK3P51956 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.73■□□□□ 0.11
NEK3P51956 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
NEK3P51956 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
NEK3P51956 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.72■□□□□ 0.11
NEK3P51956 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
NEK3P51956 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.72■□□□□ 0.11
NEK3P51956 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
NEK3P51956 KRT8P22-201ENST00000562317 1415 ntBASIC15.72■□□□□ 0.11
NEK3P51956 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.72■□□□□ 0.11
NEK3P51956 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
NEK3P51956 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.72■□□□□ 0.11
NEK3P51956 U91328.1-201ENST00000437528 223 ntBASIC15.72■□□□□ 0.11
NEK3P51956 AC244107.1-201ENST00000442033 332 ntBASIC15.72■□□□□ 0.11
NEK3P51956 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
NEK3P51956 GPR53P-205ENST00000457298 1084 ntBASIC15.72■□□□□ 0.11
NEK3P51956 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.72■□□□□ 0.11
NEK3P51956 HNRNPA1P13-201ENST00000510646 963 ntBASIC15.72■□□□□ 0.11
NEK3P51956 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.72■□□□□ 0.11
NEK3P51956 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC15.72■□□□□ 0.11
NEK3P51956 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC15.72■□□□□ 0.11
NEK3P51956 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC15.72■□□□□ 0.11
NEK3P51956 AL359711.2-201ENST00000563105 872 ntBASIC15.72■□□□□ 0.11
NEK3P51956 PIGL-212ENST00000581006 554 ntTSL 4 BASIC15.72■□□□□ 0.11
NEK3P51956 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.72■□□□□ 0.11
NEK3P51956 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC15.72■□□□□ 0.11
NEK3P51956 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC15.72■□□□□ 0.11
NEK3P51956 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
NEK3P51956 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.72■□□□□ 0.11
NEK3P51956 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
NEK3P51956 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.72■□□□□ 0.11
NEK3P51956 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 PPP1R26P4-201ENST00000619065 3527 ntBASIC15.72■□□□□ 0.11
NEK3P51956 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NEK3P51956 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.72■□□□□ 0.11
NEK3P51956 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
NEK3P51956 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NEK3P51956 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.71■□□□□ 0.11
NEK3P51956 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NEK3P51956 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
NEK3P51956 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.71■□□□□ 0.11
NEK3P51956 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NEK3P51956 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NEK3P51956 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
NEK3P51956 AC079781.5-202ENST00000641784 3743 ntBASIC15.71■□□□□ 0.11
NEK3P51956 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
NEK3P51956 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.71■□□□□ 0.11
NEK3P51956 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NEK3P51956 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
NEK3P51956 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
NEK3P51956 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
NEK3P51956 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.71■□□□□ 0.11
NEK3P51956 SOCS2P1-201ENST00000417727 557 ntBASIC15.71■□□□□ 0.11
NEK3P51956 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC15.71■□□□□ 0.11
NEK3P51956 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
NEK3P51956 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC15.71■□□□□ 0.11
NEK3P51956 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC15.71■□□□□ 0.11
NEK3P51956 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC15.71■□□□□ 0.11
NEK3P51956 FUZ-207ENST00000526575 482 ntTSL 4 BASIC15.71■□□□□ 0.11
NEK3P51956 AC015910.1-201ENST00000579400 975 ntBASIC15.71■□□□□ 0.11
NEK3P51956 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
NEK3P51956 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.71■□□□□ 0.11
NEK3P51956 CU634019.7-201ENST00000624153 1185 ntBASIC15.71■□□□□ 0.11
NEK3P51956 FP236241.2-201ENST00000624906 1185 ntBASIC15.71■□□□□ 0.11
NEK3P51956 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
NEK3P51956 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NEK3P51956 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
NEK3P51956 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
NEK3P51956 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.71■□□□□ 0.11
NEK3P51956 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms