Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.85■□□□□ 0.45
BRCA1P38398 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC17.85■□□□□ 0.45
BRCA1P38398 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC17.85■□□□□ 0.45
BRCA1P38398 AC006529.1-201ENST00000459978 637 ntBASIC17.85■□□□□ 0.45
BRCA1P38398 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC17.85■□□□□ 0.45
BRCA1P38398 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC17.85■□□□□ 0.45
BRCA1P38398 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC17.85■□□□□ 0.45
BRCA1P38398 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC17.85■□□□□ 0.45
BRCA1P38398 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
BRCA1P38398 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
BRCA1P38398 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
BRCA1P38398 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
BRCA1P38398 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
BRCA1P38398 FUCA1P1-201ENST00000374476 1351 ntBASIC17.84■□□□□ 0.45
BRCA1P38398 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
BRCA1P38398 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.84■□□□□ 0.45
BRCA1P38398 CTSL-202ENST00000342020 933 ntTSL 2 BASIC17.84■□□□□ 0.45
BRCA1P38398 GAS5-209ENST00000430245 723 ntTSL 3 BASIC17.84■□□□□ 0.45
BRCA1P38398 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
BRCA1P38398 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC17.84■□□□□ 0.45
BRCA1P38398 RNA5SP406-201ENST00000516106 112 ntBASIC17.84■□□□□ 0.45
BRCA1P38398 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC17.84■□□□□ 0.45
BRCA1P38398 AL133467.4-201ENST00000602953 725 ntBASIC17.84■□□□□ 0.45
BRCA1P38398 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
BRCA1P38398 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
BRCA1P38398 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC17.84■□□□□ 0.45
BRCA1P38398 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
BRCA1P38398 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC17.84■□□□□ 0.45
BRCA1P38398 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
BRCA1P38398 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
BRCA1P38398 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
BRCA1P38398 FTX-216ENST00000638985 1367 ntTSL 5 BASIC17.84■□□□□ 0.45
BRCA1P38398 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
BRCA1P38398 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
BRCA1P38398 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
BRCA1P38398 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC17.84■□□□□ 0.45
BRCA1P38398 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.84■□□□□ 0.45
BRCA1P38398 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
BRCA1P38398 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
BRCA1P38398 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC17.84■□□□□ 0.45
BRCA1P38398 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC17.84■□□□□ 0.45
BRCA1P38398 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC17.84■□□□□ 0.45
BRCA1P38398 BPIFB5P-201ENST00000457066 1099 ntBASIC17.84■□□□□ 0.45
BRCA1P38398 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
BRCA1P38398 AC068831.5-201ENST00000557387 328 ntBASIC17.84■□□□□ 0.45
BRCA1P38398 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC17.84■□□□□ 0.45
BRCA1P38398 DRG2-220ENST00000583355 891 ntTSL 3 BASIC17.84■□□□□ 0.45
BRCA1P38398 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC17.84■□□□□ 0.45
BRCA1P38398 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.84■□□□□ 0.45
BRCA1P38398 PHB-210ENST00000511832 1509 ntTSL 2 BASIC17.83■□□□□ 0.45
BRCA1P38398 BRD7P5-201ENST00000299197 1822 ntBASIC17.83■□□□□ 0.45
BRCA1P38398 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC17.83■□□□□ 0.45
BRCA1P38398 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
BRCA1P38398 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
BRCA1P38398 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
BRCA1P38398 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
BRCA1P38398 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
BRCA1P38398 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC17.83■□□□□ 0.45
BRCA1P38398 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.83■□□□□ 0.45
BRCA1P38398 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
BRCA1P38398 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
BRCA1P38398 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
BRCA1P38398 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
BRCA1P38398 AC106820.2-201ENST00000563775 3264 ntBASIC17.83■□□□□ 0.44
BRCA1P38398 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.83■□□□□ 0.44
BRCA1P38398 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.83■□□□□ 0.44
BRCA1P38398 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC17.83■□□□□ 0.44
BRCA1P38398 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
BRCA1P38398 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC17.83■□□□□ 0.44
BRCA1P38398 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
BRCA1P38398 DUT-207ENST00000559416 635 ntTSL 2 BASIC17.83■□□□□ 0.44
BRCA1P38398 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC17.83■□□□□ 0.44
BRCA1P38398 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
BRCA1P38398 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC17.83■□□□□ 0.44
BRCA1P38398 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC17.83■□□□□ 0.44
BRCA1P38398 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
BRCA1P38398 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
BRCA1P38398 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC17.83■□□□□ 0.44
BRCA1P38398 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC17.83■□□□□ 0.44
BRCA1P38398 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
BRCA1P38398 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
BRCA1P38398 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BRCA1P38398 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BRCA1P38398 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
BRCA1P38398 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.82■□□□□ 0.44
BRCA1P38398 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC17.82■□□□□ 0.44
BRCA1P38398 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
BRCA1P38398 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
BRCA1P38398 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
BRCA1P38398 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC17.82■□□□□ 0.44
BRCA1P38398 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC17.82■□□□□ 0.44
BRCA1P38398 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
BRCA1P38398 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC17.82■□□□□ 0.44
BRCA1P38398 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC17.82■□□□□ 0.44
BRCA1P38398 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC17.82■□□□□ 0.44
BRCA1P38398 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC17.82■□□□□ 0.44
BRCA1P38398 LINC00244-201ENST00000625073 613 ntBASIC17.82■□□□□ 0.44
BRCA1P38398 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC17.82■□□□□ 0.44
BRCA1P38398 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BRCA1P38398 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms