Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC9P31274 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC9P31274 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC19.85■□□□□ 0.77
HOXC9P31274 SSR4P1-203ENST00000599569 2260 ntBASIC19.85■□□□□ 0.77
HOXC9P31274 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC19.84■□□□□ 0.77
HOXC9P31274 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC9P31274 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC19.84■□□□□ 0.77
HOXC9P31274 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC9P31274 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
HOXC9P31274 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
HOXC9P31274 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
HOXC9P31274 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
HOXC9P31274 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC9P31274 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC19.84■□□□□ 0.77
HOXC9P31274 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC19.84■□□□□ 0.77
HOXC9P31274 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC9P31274 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC19.84■□□□□ 0.77
HOXC9P31274 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC9P31274 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC9P31274 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC9P31274 AC006122.1-201ENST00000493323 440 ntBASIC19.84■□□□□ 0.77
HOXC9P31274 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC19.84■□□□□ 0.77
HOXC9P31274 AL157813.1-201ENST00000612996 587 ntBASIC19.84■□□□□ 0.77
HOXC9P31274 AL353726.2-201ENST00000623259 884 ntBASIC19.84■□□□□ 0.77
HOXC9P31274 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
HOXC9P31274 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC9P31274 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.84■□□□□ 0.77
HOXC9P31274 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC19.84■□□□□ 0.77
HOXC9P31274 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC19.84■□□□□ 0.77
HOXC9P31274 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC9P31274 ZBED1P1-201ENST00000502364 1930 ntBASIC19.84■□□□□ 0.77
HOXC9P31274 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC9P31274 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC9P31274 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC19.84■□□□□ 0.77
HOXC9P31274 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
HOXC9P31274 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC9P31274 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC9P31274 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC9P31274 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC19.83■□□□□ 0.77
HOXC9P31274 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC9P31274 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC9P31274 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC19.83■□□□□ 0.77
HOXC9P31274 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
HOXC9P31274 CYP4F23P-201ENST00000593402 1579 ntBASIC19.83■□□□□ 0.77
HOXC9P31274 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC19.83■□□□□ 0.77
HOXC9P31274 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC19.83■□□□□ 0.77
HOXC9P31274 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC19.83■□□□□ 0.77
HOXC9P31274 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
HOXC9P31274 TMBIM7P-203ENST00000641617 1718 ntBASIC19.83■□□□□ 0.77
HOXC9P31274 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC9P31274 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC9P31274 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC9P31274 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC9P31274 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC9P31274 PARP8-206ENST00000503665 572 ntTSL 4 BASIC19.83■□□□□ 0.77
HOXC9P31274 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
HOXC9P31274 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC19.83■□□□□ 0.77
HOXC9P31274 U62317.3-201ENST00000608319 855 ntBASIC19.83■□□□□ 0.77
HOXC9P31274 MEG3_2.1-201ENST00000611456 105 ntBASIC19.83■□□□□ 0.77
HOXC9P31274 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC19.83■□□□□ 0.77
HOXC9P31274 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC9P31274 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC9P31274 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC19.83■□□□□ 0.76
HOXC9P31274 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC9P31274 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC9P31274 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC9P31274 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC19.83■□□□□ 0.76
HOXC9P31274 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC9P31274 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC9P31274 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
HOXC9P31274 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.83■□□□□ 0.76
HOXC9P31274 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC9P31274 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC9P31274 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC9P31274 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC9P31274 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC19.82■□□□□ 0.76
HOXC9P31274 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC9P31274 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC9P31274 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC9P31274 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC19.82■□□□□ 0.76
HOXC9P31274 AC144522.1-201ENST00000625111 1658 ntBASIC19.82■□□□□ 0.76
HOXC9P31274 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC9P31274 KRT8P21-201ENST00000430398 1491 ntBASIC19.82■□□□□ 0.76
HOXC9P31274 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC9P31274 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC9P31274 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
HOXC9P31274 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC9P31274 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC19.82■□□□□ 0.76
HOXC9P31274 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC19.82■□□□□ 0.76
HOXC9P31274 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC19.82■□□□□ 0.76
HOXC9P31274 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC19.82■□□□□ 0.76
HOXC9P31274 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC19.82■□□□□ 0.76
HOXC9P31274 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC19.82■□□□□ 0.76
HOXC9P31274 NAT9-211ENST00000580632 799 ntTSL 3 BASIC19.82■□□□□ 0.76
HOXC9P31274 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC19.82■□□□□ 0.76
HOXC9P31274 IRF3-215ENST00000596822 823 ntTSL 3 BASIC19.82■□□□□ 0.76
HOXC9P31274 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC9P31274 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC19.82■□□□□ 0.76
HOXC9P31274 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC19.82■□□□□ 0.76
HOXC9P31274 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms