Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC13.97□□□□□ -0.17
MSX1P28360 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
MSX1P28360 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
MSX1P28360 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC13.97□□□□□ -0.17
MSX1P28360 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC13.97□□□□□ -0.17
MSX1P28360 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 LBX2-201ENST00000341396 886 ntTSL 3 BASIC13.97□□□□□ -0.17
MSX1P28360 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC13.97□□□□□ -0.17
MSX1P28360 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
MSX1P28360 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
MSX1P28360 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
MSX1P28360 STX1A-203ENST00000395155 783 ntTSL 2 BASIC13.97□□□□□ -0.17
MSX1P28360 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC13.97□□□□□ -0.17
MSX1P28360 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC13.97□□□□□ -0.17
MSX1P28360 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 ACTBP11-201ENST00000436287 1126 ntBASIC13.97□□□□□ -0.17
MSX1P28360 KLF2P4-201ENST00000451959 1225 ntBASIC13.97□□□□□ -0.17
MSX1P28360 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC13.97□□□□□ -0.17
MSX1P28360 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
MSX1P28360 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.97□□□□□ -0.17
MSX1P28360 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.97□□□□□ -0.17
MSX1P28360 AP001582.1-201ENST00000525856 295 ntBASIC13.97□□□□□ -0.17
MSX1P28360 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC13.97□□□□□ -0.17
MSX1P28360 ADAM3B-201ENST00000569937 840 ntBASIC13.97□□□□□ -0.17
MSX1P28360 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC13.97□□□□□ -0.17
MSX1P28360 METTL26-214ENST00000614890 801 ntTSL 3 BASIC13.97□□□□□ -0.17
MSX1P28360 AP005019.2-201ENST00000615104 511 ntBASIC13.97□□□□□ -0.17
MSX1P28360 WNT11-204ENST00000621122 789 ntTSL 5 BASIC13.97□□□□□ -0.17
MSX1P28360 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC13.97□□□□□ -0.17
MSX1P28360 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC13.97□□□□□ -0.17
MSX1P28360 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC13.97□□□□□ -0.17
MSX1P28360 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
MSX1P28360 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
MSX1P28360 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC13.97□□□□□ -0.17
MSX1P28360 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC13.97□□□□□ -0.17
MSX1P28360 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
MSX1P28360 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
MSX1P28360 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX1P28360 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
MSX1P28360 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
MSX1P28360 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX1P28360 LINC00554-201ENST00000564841 3011 ntBASIC13.96□□□□□ -0.17
MSX1P28360 PGR-210ENST00000619228 3038 ntTSL 5 BASIC13.96□□□□□ -0.17
MSX1P28360 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
MSX1P28360 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX1P28360 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX1P28360 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX1P28360 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX1P28360 PDIA3P1-201ENST00000471856 1510 ntBASIC13.96□□□□□ -0.17
MSX1P28360 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX1P28360 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC13.96□□□□□ -0.17
MSX1P28360 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX1P28360 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX1P28360 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
MSX1P28360 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX1P28360 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.96□□□□□ -0.17
MSX1P28360 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
MSX1P28360 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
MSX1P28360 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
MSX1P28360 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
MSX1P28360 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC13.96□□□□□ -0.17
MSX1P28360 CTBP2P5-201ENST00000454986 1264 ntBASIC13.96□□□□□ -0.17
MSX1P28360 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
MSX1P28360 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
MSX1P28360 SLC25A47P1-201ENST00000531577 414 ntBASIC13.96□□□□□ -0.17
MSX1P28360 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC13.96□□□□□ -0.17
MSX1P28360 MIR5189-201ENST00000577370 114 ntBASIC13.96□□□□□ -0.17
MSX1P28360 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC13.96□□□□□ -0.17
MSX1P28360 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC13.96□□□□□ -0.17
MSX1P28360 AC060766.1-201ENST00000590824 627 ntBASIC13.96□□□□□ -0.17
MSX1P28360 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC13.96□□□□□ -0.17
MSX1P28360 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC13.96□□□□□ -0.17
MSX1P28360 AL022328.1-201ENST00000610050 478 ntBASIC13.96□□□□□ -0.17
MSX1P28360 AL603764.1-201ENST00000636452 321 ntBASIC13.96□□□□□ -0.17
MSX1P28360 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX1P28360 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC13.96□□□□□ -0.17
MSX1P28360 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC13.96□□□□□ -0.17
MSX1P28360 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC13.96□□□□□ -0.17
MSX1P28360 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX1P28360 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
MSX1P28360 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC13.96□□□□□ -0.18
MSX1P28360 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
MSX1P28360 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms