Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC13.88□□□□□ -0.19
HOXD4P09016 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC13.88□□□□□ -0.19
HOXD4P09016 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 AL596087.1-201ENST00000400979 1969 ntBASIC13.87□□□□□ -0.19
HOXD4P09016 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
HOXD4P09016 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
HOXD4P09016 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
HOXD4P09016 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXD4P09016 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXD4P09016 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXD4P09016 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
HOXD4P09016 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
HOXD4P09016 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC13.87□□□□□ -0.19
HOXD4P09016 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
HOXD4P09016 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXD4P09016 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.87□□□□□ -0.19
HOXD4P09016 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC13.87□□□□□ -0.19
HOXD4P09016 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
HOXD4P09016 AC099336.1-201ENST00000417053 1171 ntBASIC13.87□□□□□ -0.19
HOXD4P09016 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC13.87□□□□□ -0.19
HOXD4P09016 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXD4P09016 CSF2RBP1-201ENST00000447905 391 ntBASIC13.87□□□□□ -0.19
HOXD4P09016 GAPDHP40-201ENST00000505218 1006 ntBASIC13.87□□□□□ -0.19
HOXD4P09016 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC13.87□□□□□ -0.19
HOXD4P09016 MIR4313-201ENST00000580760 101 ntBASIC13.87□□□□□ -0.19
HOXD4P09016 TBCB-211ENST00000589996 724 ntTSL 3 BASIC13.87□□□□□ -0.19
HOXD4P09016 RHOXF1P1-202ENST00000635473 501 ntBASIC13.87□□□□□ -0.19
HOXD4P09016 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
HOXD4P09016 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
HOXD4P09016 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD4P09016 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.87□□□□□ -0.19
HOXD4P09016 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXD4P09016 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC13.86□□□□□ -0.19
HOXD4P09016 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
HOXD4P09016 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
HOXD4P09016 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC13.86□□□□□ -0.19
HOXD4P09016 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC13.86□□□□□ -0.19
HOXD4P09016 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC13.86□□□□□ -0.19
HOXD4P09016 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.86□□□□□ -0.19
HOXD4P09016 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 TP73-209ENST00000603362 1668 ntTSL 5 BASIC13.86□□□□□ -0.19
HOXD4P09016 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC13.86□□□□□ -0.19
HOXD4P09016 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
HOXD4P09016 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC13.86□□□□□ -0.19
HOXD4P09016 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC13.86□□□□□ -0.19
HOXD4P09016 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC13.86□□□□□ -0.19
HOXD4P09016 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC13.86□□□□□ -0.19
HOXD4P09016 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC13.86□□□□□ -0.19
HOXD4P09016 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC13.86□□□□□ -0.19
HOXD4P09016 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.86□□□□□ -0.19
HOXD4P09016 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC13.86□□□□□ -0.19
HOXD4P09016 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC13.86□□□□□ -0.19
HOXD4P09016 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC13.86□□□□□ -0.19
HOXD4P09016 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
HOXD4P09016 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC13.86□□□□□ -0.19
HOXD4P09016 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC13.86□□□□□ -0.19
HOXD4P09016 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.86□□□□□ -0.19
HOXD4P09016 GPR182-203ENST00000622922 591 ntBASIC13.86□□□□□ -0.19
HOXD4P09016 AC132938.4-201ENST00000623835 848 ntBASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms