Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
HMGB3O15347 BCL2L13-202ENST00000337612 4905 ntTSL 2 BASIC12.32□□□□□ -0.44
HMGB3O15347 SLC9A7P1-202ENST00000556476 2239 ntBASIC12.32□□□□□ -0.44
HMGB3O15347 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
HMGB3O15347 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 KRT18P27-201ENST00000427733 1299 ntBASIC12.32□□□□□ -0.44
HMGB3O15347 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
HMGB3O15347 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC12.32□□□□□ -0.44
HMGB3O15347 AL031432.2-201ENST00000566714 459 ntBASIC12.32□□□□□ -0.44
HMGB3O15347 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC12.32□□□□□ -0.44
HMGB3O15347 AC002347.1-201ENST00000569543 541 ntBASIC12.32□□□□□ -0.44
HMGB3O15347 AL928711.1-201ENST00000570165 459 ntBASIC12.32□□□□□ -0.44
HMGB3O15347 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC12.32□□□□□ -0.44
HMGB3O15347 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC12.32□□□□□ -0.44
HMGB3O15347 AC004790.2-201ENST00000623588 572 ntBASIC12.32□□□□□ -0.44
HMGB3O15347 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC12.32□□□□□ -0.44
HMGB3O15347 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 SPTB-203ENST00000389721 6705 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC12.32□□□□□ -0.44
HMGB3O15347 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC12.32□□□□□ -0.44
HMGB3O15347 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
HMGB3O15347 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC12.32□□□□□ -0.44
HMGB3O15347 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 FES-203ENST00000394302 2133 ntTSL 5 BASIC12.32□□□□□ -0.44
HMGB3O15347 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC12.32□□□□□ -0.44
HMGB3O15347 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC12.32□□□□□ -0.44
HMGB3O15347 PCDHGA6-201ENST00000517434 4775 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
HMGB3O15347 PMS2P7-201ENST00000506558 1336 ntBASIC12.32□□□□□ -0.44
HMGB3O15347 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 HLCS-202ENST00000399120 6466 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
HMGB3O15347 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC12.32□□□□□ -0.44
HMGB3O15347 PPIL2-201ENST00000335025 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC12.31□□□□□ -0.44
HMGB3O15347 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC12.31□□□□□ -0.44
HMGB3O15347 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC12.31□□□□□ -0.44
HMGB3O15347 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 NRP1-201ENST00000265371 5882 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
HMGB3O15347 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC12.31□□□□□ -0.44
HMGB3O15347 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC12.31□□□□□ -0.44
HMGB3O15347 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 SCO1-201ENST00000255390 9612 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 AC005252.3-201ENST00000623855 2258 ntBASIC12.31□□□□□ -0.44
HMGB3O15347 AC006254.1-201ENST00000468472 5640 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
HMGB3O15347 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC12.31□□□□□ -0.44
HMGB3O15347 CICP8-201ENST00000455800 2813 ntBASIC12.31□□□□□ -0.44
HMGB3O15347 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC12.31□□□□□ -0.44
HMGB3O15347 GEMIN5-201ENST00000285873 5397 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC12.31□□□□□ -0.44
HMGB3O15347 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
HMGB3O15347 AC018529.2-202ENST00000611482 3087 ntBASIC12.31□□□□□ -0.44
HMGB3O15347 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
HMGB3O15347 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC12.31□□□□□ -0.44
HMGB3O15347 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC12.31□□□□□ -0.44
HMGB3O15347 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC12.31□□□□□ -0.44
HMGB3O15347 RAC2-202ENST00000401529 569 ntTSL 4 BASIC12.31□□□□□ -0.44
HMGB3O15347 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC12.31□□□□□ -0.44
HMGB3O15347 AC243562.2-201ENST00000561247 970 ntBASIC12.31□□□□□ -0.44
HMGB3O15347 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC12.31□□□□□ -0.44
HMGB3O15347 DBP-204ENST00000599385 709 ntTSL 3 BASIC12.31□□□□□ -0.44
HMGB3O15347 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC12.31□□□□□ -0.44
HMGB3O15347 AL078644.1-201ENST00000609881 752 ntBASIC12.31□□□□□ -0.44
HMGB3O15347 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 TMEM131L-203ENST00000409959 5017 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
HMGB3O15347 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms