Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
SDCBPO00560 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC13.03□□□□□ -0.32
SDCBPO00560 CETN4P-206ENST00000642099 2168 ntBASIC13.03□□□□□ -0.32
SDCBPO00560 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.03□□□□□ -0.32
SDCBPO00560 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
SDCBPO00560 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
SDCBPO00560 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
SDCBPO00560 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
SDCBPO00560 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
SDCBPO00560 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
SDCBPO00560 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
SDCBPO00560 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
SDCBPO00560 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC13.02□□□□□ -0.32
SDCBPO00560 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC13.02□□□□□ -0.32
SDCBPO00560 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC13.02□□□□□ -0.32
SDCBPO00560 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
SDCBPO00560 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
SDCBPO00560 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
SDCBPO00560 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
SDCBPO00560 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
SDCBPO00560 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
SDCBPO00560 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
SDCBPO00560 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
SDCBPO00560 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
SDCBPO00560 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC13.02□□□□□ -0.33
SDCBPO00560 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
SDCBPO00560 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
SDCBPO00560 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
SDCBPO00560 SPDYE17-201ENST00000412399 783 ntBASIC13.02□□□□□ -0.33
SDCBPO00560 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
SDCBPO00560 DNAJB3-202ENST00000449667 1266 ntBASIC13.02□□□□□ -0.33
SDCBPO00560 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC13.02□□□□□ -0.33
SDCBPO00560 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC13.02□□□□□ -0.33
SDCBPO00560 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC13.02□□□□□ -0.33
SDCBPO00560 AL133215.2-201ENST00000609242 977 ntBASIC13.02□□□□□ -0.33
SDCBPO00560 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
SDCBPO00560 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
SDCBPO00560 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
SDCBPO00560 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC13.02□□□□□ -0.33
SDCBPO00560 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
SDCBPO00560 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC13.02□□□□□ -0.33
SDCBPO00560 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
SDCBPO00560 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC13.02□□□□□ -0.33
SDCBPO00560 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC13.02□□□□□ -0.33
SDCBPO00560 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
SDCBPO00560 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
SDCBPO00560 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.33
SDCBPO00560 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
SDCBPO00560 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC13.02□□□□□ -0.33
SDCBPO00560 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC13.02□□□□□ -0.33
SDCBPO00560 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
SDCBPO00560 GRAMD4P3-201ENST00000621665 1669 ntBASIC13.02□□□□□ -0.33
SDCBPO00560 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC13.02□□□□□ -0.33
SDCBPO00560 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
SDCBPO00560 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.02□□□□□ -0.33
SDCBPO00560 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
SDCBPO00560 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
SDCBPO00560 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
SDCBPO00560 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.01□□□□□ -0.33
SDCBPO00560 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC13.01□□□□□ -0.33
SDCBPO00560 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
SDCBPO00560 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC13.01□□□□□ -0.33
SDCBPO00560 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.01□□□□□ -0.33
SDCBPO00560 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC13.01□□□□□ -0.33
SDCBPO00560 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC13.01□□□□□ -0.33
SDCBPO00560 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC13.01□□□□□ -0.33
SDCBPO00560 AL079307.3-201ENST00000556114 283 ntBASIC13.01□□□□□ -0.33
SDCBPO00560 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC13.01□□□□□ -0.33
SDCBPO00560 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC13.01□□□□□ -0.33
SDCBPO00560 AC027612.4-201ENST00000605371 583 ntBASIC13.01□□□□□ -0.33
SDCBPO00560 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC13.01□□□□□ -0.33
SDCBPO00560 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC13.01□□□□□ -0.33
SDCBPO00560 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 KRT8P12-202ENST00000472924 1397 ntBASIC13.01□□□□□ -0.33
SDCBPO00560 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
SDCBPO00560 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SDCBPO00560 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms