Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 AC013726.1-201ENST00000563747 2285 ntBASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 FGD5P1-202ENST00000614866 2498 ntBASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 AL137783.1-201ENST00000623494 1896 ntBASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 CICP23-201ENST00000605013 2741 ntBASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 RNU1-114P-201ENST00000365297 166 ntBASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 AC098614.1-201ENST00000368528 745 ntBASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 COX5BP8-201ENST00000416911 349 ntBASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 AL162726.2-201ENST00000438986 1017 ntBASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
ATG4BQ9Y4P1 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 AC063926.2-201ENST00000623766 1308 ntBASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 AL139094.1-201ENST00000405549 1188 ntBASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 NME2P1-201ENST00000426182 414 ntBASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 CR383656.12-201ENST00000549567 513 ntBASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms