Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SHANK3Q9BYB0 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
SHANK3Q9BYB0 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SHANK3Q9BYB0 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHANK3Q9BYB0 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC19.08■□□□□ 0.64
SHANK3Q9BYB0 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
SHANK3Q9BYB0 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SHANK3Q9BYB0 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHANK3Q9BYB0 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHANK3Q9BYB0 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SHANK3Q9BYB0 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHANK3Q9BYB0 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SHANK3Q9BYB0 MIR645-201ENST00000385283 94 ntBASIC19.08■□□□□ 0.64
SHANK3Q9BYB0 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
SHANK3Q9BYB0 RHEB-207ENST00000496004 744 ntTSL 2 BASIC19.08■□□□□ 0.64
SHANK3Q9BYB0 MIR2392-201ENST00000584881 84 ntBASIC19.08■□□□□ 0.64
SHANK3Q9BYB0 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC19.08■□□□□ 0.64
SHANK3Q9BYB0 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC19.08■□□□□ 0.64
SHANK3Q9BYB0 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SHANK3Q9BYB0 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SHANK3Q9BYB0 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHANK3Q9BYB0 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHANK3Q9BYB0 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 AC073869.2-201ENST00000417338 1026 ntBASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 OR8T1P-201ENST00000421347 918 ntBASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 WASH3P-207ENST00000560956 1394 ntBASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHANK3Q9BYB0 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 GAS5-209ENST00000430245 723 ntTSL 3 BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 MT3-203ENST00000565838 421 ntTSL 3 BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHANK3Q9BYB0 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 RN7SL665P-201ENST00000578793 300 ntBASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 AC092135.3-201ENST00000624151 1846 ntBASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 AC009093.10-201ENST00000641956 1442 ntBASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 F10-203ENST00000409306 1450 ntTSL 3 BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 STK16-203ENST00000409516 895 ntTSL 2 BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 AP000911.2-201ENST00000534330 502 ntBASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC19.05■□□□□ 0.64
SHANK3Q9BYB0 AL118516.1-201ENST00000564152 670 ntBASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms